PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_C340A8E74.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 260aa    MW: 29587.1 Da    PI: 9.963
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_C340A8E74.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.35.9e-18101190198
                            EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                            f+k++++s+v++  +l lp +f+++h  ++ ++ +++lede+g +++  +   +++ +  l++GW++F   ++L++gD++ F+l + +
  Traes_1AL_C340A8E74.2 101 FVKTMVRSHVSSCFWLGLPSSFCKDHL-PP-REHKMVLEDEEGVEFDAVY--IGNRTG--LSGGWRGFSMHHDLEDGDSLAFELAEPD 182
                            89*********************9994.44.4459***************..555444..***********************98767 PP

                            EE..EEEEE- CS
                     B3  89 efelvvkvfr 98 
                            +f  ++ +f+
  Traes_1AL_C340A8E74.2 183 RF--KIYIFK 190
                            77..777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-2193191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-2494190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-2699190No hitNo description
SMARTSM010191.1E-22101192IPR003340B3 DNA binding domain
PfamPF023621.2E-16101190IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548101192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MAKSLIQATR QQDKTPRASP KSRKKFEATT EVRRSSRART TVSYKDDFPE LDDFVRRRRI  60
SKSVDNGRGY TGRISSYQQQ QRAFKRAEKL KDSLDPDNPS FVKTMVRSHV SSCFWLGLPS  120
SFCKDHLPPR EHKMVLEDEE GVEFDAVYIG NRTGLSGGWR GFSMHHDLED GDSLAFELAE  180
PDRFKIYIFK AIEDGKEAEP NDKNTDVDSD SAQEVPDQTD SPVSEPPSSP EPLKGAKRRK  240
LPSSPEPLKG AKRRKLRGRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1237254RRKLPSSPEPLKGAKRRK
2247253LKGAKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3719300.0AK371930.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2143H22.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158104.11e-162B3 domain-containing protein Os05g0481400
SwissprotQ5KQI41e-115Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A3B5Y3J90.0A0A3B5Y3J9_WHEAT; Uncharacterized protein
STRINGTraes_1AL_C340A8E74.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP113703339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.11e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]