PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_BFDD733CB.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 780aa MW: 89683.8 Da PI: 7.0653 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.8 | 5.6e-16 | 172 | 253 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fY+++A +GF r+ +++k+ +k ++ C+++gk +++++ +++r+ ++ +C+ak+ vk++ +++we t +++eHnH+ Traes_1AL_BFDD733CB.2 172 RFYSTHAMLTGFAARRGTNYKR------KKFHLLCNRSGKLKPTQDL--QRKRKVNVLGSQCQAKVIVKLH-NEQWEFTGVKHEHNHP 250 5********************9......4678***********9988..88888889999**********9.9*************** PP FAR1 89 lap 91 l+p Traes_1AL_BFDD733CB.2 251 LCP 253 *97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-13 | 172 | 253 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-27 | 376 | 468 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.124 | 658 | 694 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 780 aa Download sequence Send to blast |
MHGCIHQTIA GNRHRALLMQ PISNEYVVMT YQDRAVEPSH SGEGLRVEKE HAGKQANPEG 60 SQQPIGEINQ ENASNGIGTT VQGLLADMLH KQTNSVDPTV QHAEEQDQLH DVTEGHELCS 120 NDTSSGSDAG SSSGSELDTE LGKCYYPSIE ALENSRPPEV GMKFPTLEDA ERFYSTHAML 180 TGFAARRGTN YKRKKFHLLC NRSGKLKPTQ DLQRKRKVNV LGSQCQAKVI VKLHNEQWEF 240 TGVKHEHNHP LCPSPSLTSF FLDHKYLSSE EKLFLRVLQQ SRVNPRKAMN IFQRMRSNFG 300 NVSSSNEKDM SNSQCVDQWR KENSDVETAL KRFKELELRN LGFSYTMQKD EDNIVRSLFW 360 TDARSRVDYE IFGDFISFST SYSTNRHNMP FTPIIGVNNH GRILVFGCAL LQDQKAETFK 420 WMFQTFLHVM RGKLPKTIII DQDEGMVKAI AEVMPQVRHR LCKFSVMRKA QEMLGAFMAA 480 RGNMNAELHS LVDNSLTEKE FEEGWAVLIE RYDASENEYL RLMWKTRKNW VPVYFQADFY 540 PFVESAEHGE GSNLLFKDNV LPKDRIEKFI EQYERIQEGI VKTEEEDTLQ SATEPAYFSM 600 QPIEKHAARI YTRQIFLRVQ KELYYSTALN AHEIQGGAAY RLEKVFDYEN PEFDRNSFEV 660 LVDPGTHTFK CQCAKFTRDG ILCCHIFRVF TQLGVIEIPA QYIVPRWARE FREERLKEYE 720 EKCSKRTEER KRCVMLLGKM ADIGKGICAD SAKSGCFMLK LDKVQEKLVG ADGQIVLWSK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178460.1 | 0.0 | protein FAR1-RELATED SEQUENCE 9-like | ||||
TrEMBL | A0A452ZIF3 | 0.0 | A0A452ZIF3_AEGTS; Uncharacterized protein | ||||
STRING | Traes_1AL_BFDD733CB.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G27110.2 | 4e-82 | FAR1-related sequence 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|