PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_7A2072713.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 204aa MW: 21274.4 Da PI: 8.8049 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.8 | 9.1e-06 | 70 | 89 | 2 | 21 |
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ Cgk+F+++ L H+r Traes_1AL_7A2072713.1 70 PCTECGKRFPSWKALFGHMR 89 5******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.0034 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.619 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.19E-9 | 70 | 91 | No hit | No description |
Pfam | PF13912 | 1.6E-9 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.9E-4 | 71 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.19E-9 | 175 | 202 | No hit | No description |
SMART | SM00355 | 0.71 | 180 | 202 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.3E-11 | 180 | 203 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 180 | 204 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 182 | 204 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048235 | Biological Process | pollen sperm cell differentiation | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MEPPPEPAAP PPPPPPPPHP HDTTLTLTLA LPPPGLASVL ISPKPGARRP RPEGGASPRP 60 RCSPIGDTPP CTECGKRFPS WKALFGHMRC HPERQWRGIT PPPAHFCQGV AAAPVAPAGQ 120 FTVQEREVAS SLLMLSSARP GASKGKKVVN AAAITRSGME SCGTSACASV VPGPANCDEH 180 NCSVCDRGFA SGQALGGHKR CHWH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163733.1 | 1e-107 | zinc finger protein ZAT3-like | ||||
Swissprot | O65499 | 1e-28 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A446IU29 | 1e-139 | A0A446IU29_TRITD; Uncharacterized protein | ||||
STRING | Traes_1AL_7A2072713.1 | 1e-142 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11612 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 2e-29 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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