PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_1AL_3493FCCBE.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

Trihelix

Protein Properties

Length: 442aa MW: 50157.8 Da PI: 6.4773

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_1AL_3493FCCBE.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	77.2	2.5e-24	120	216	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sesss 77 +Wt ++v++Li+a ++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++t ++++ Traes_1AL_3493FCCBE.1 120 KWTGSMVKLLITAASYTGEDPGADLgggrrnitvmQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGTaCNVVD 207 7*******************8744455667777********************************************5489988 PP trihelix 78 tcpyfdqle 86 + +++d ++ Traes_1AL_3493FCCBE.1 208 NPALLDCMN 216 888888775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.9E-18	118	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence Send to blast
MDRSNLPPGN TTQGTPYASL NLHGNSLQMH APSSGKHLFN QSQMPGSFTM PINRATEHDN 60 PGSGFQFVEH GKKDHHQQQQ QHNHLIKNSI SDDEEHDMTE DATDAQSGKG KKGSAWHRMK 120 WTGSMVKLLI TAASYTGEDP GADLGGGRRN ITVMQKKGKW KAISKVMGER GCNVSPQQCE 180 DKFNDLNKRY KRLTDILGRG TACNVVDNPA LLDCMNNLSD KMKEDARKIL NSKHLFYEMM 240 CSYHNNNRVN LPEDLALQHS LQVALRCKEE HDPRRDASGD AEEDDHSADS DYEDHDEEHQ 300 AVHHSMRDPS MNKRMCHALD HGDAGFLTSS SNDGSGSLDP HGIALDINNG FTDGTNLSVV 360 RKELASQAIE LRKRRLQIEA QELEVTEQRL KWERFKRKKD REIERMESEN EEMMLENKRL 420 ELQLKHKELE VELKLKGNPD HE

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence Send to blast

MDRSNLPPGN TTQGTPYASL NLHGNSLQMH APSSGKHLFN QSQMPGSFTM PINRATEHDN  60
PGSGFQFVEH GKKDHHQQQQ QHNHLIKNSI SDDEEHDMTE DATDAQSGKG KKGSAWHRMK  120
WTGSMVKLLI TAASYTGEDP GADLGGGRRN ITVMQKKGKW KAISKVMGER GCNVSPQQCE  180
DKFNDLNKRY KRLTDILGRG TACNVVDNPA LLDCMNNLSD KMKEDARKIL NSKHLFYEMM  240
CSYHNNNRVN LPEDLALQHS LQVALRCKEE HDPRRDASGD AEEDDHSADS DYEDHDEEHQ  300
AVHHSMRDPS MNKRMCHALD HGDAGFLTSS SNDGSGSLDP HGIALDINNG FTDGTNLSVV  360
RKELASQAIE LRKRRLQIEA QELEVTEQRL KWERFKRKKD REIERMESEN EEMMLENKRL  420
ELQLKHKELE VELKLKGNPD HE

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK371200	0.0	AK371200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2127P16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187300.1	0.0	stress response protein NST1-like
TrEMBL	A0A3B5Y7Y0	0.0	A0A3B5Y7Y0_WHEAT; SAB
TrEMBL	A0A446JFI6	0.0	A0A446JFI6_TRITD; Uncharacterized protein
STRING	Traes_1AL_3493FCCBE.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2920	38	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	2e-87	sequence-specific DNA binding transcription factors

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]