PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1AL_2EDF05396.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 284aa MW: 31262.4 Da PI: 7.5672 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.2 | 1.6e-32 | 58 | 112 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l +m+v+g+t++hvkSHLQkYRl Traes_1AL_2EDF05396.2 58 KQRLRWTSDLHSRFVDAIAQLGGPDRATPKGVLTVMGVPGITIYHVKSHLQKYRL 112 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.171 | 55 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-30 | 56 | 113 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-16 | 57 | 112 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-25 | 58 | 113 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-7 | 60 | 111 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 4.6E-24 | 150 | 195 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MCMRISYNCC STLMMYHAKK FSVPFAPQRA QNSEHVSNIG AFGGSNISNP ANPVGSGKQR 60 LRWTSDLHSR FVDAIAQLGG PDRATPKGVL TVMGVPGITI YHVKSHLQKY RLAKYIPESP 120 AEVAAGVGSK DEKKDSSDSF SNADSAPGSQ INEALKMQME VQKRLHEQLE VQKQLQLRIE 180 AQGKYLQMII EEQQKLGGSL EGSEERKLSH SPPTLDDYPD SIQPSPKKPR LDDLSTDAVR 240 GVTQPGFESH LIGPWDQELC PKTNICDPAF QVDEFKANPG LSKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 4e-23 | 57 | 115 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY625680 | 0.0 | AY625680.1 Triticum aestivum MYB transcription factor (MYB80) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198211.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 5e-68 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A3B5Y4E2 | 0.0 | A0A3B5Y4E2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_2EDF05396.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7913 | 33 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 7e-63 | G2-like family protein |
Publications ? help Back to Top | |||
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