PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_1AL_0BE456AC0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 92041.1 Da PI: 5.7193 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.8 | 8.9e-19 | 32 | 90 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++p+ ++r++L +++ +++ rq+kvWFqNrR ++k+ Traes_1AL_0BE456AC0.1 32 KYVRYTPEQVEALERVYAECPKPTSTRRQQLLRECpilsNIEPRQIKVWFQNRRCRDKQ 90 5678****************************************************996 PP | |||||||
2 | START | 160.2 | 1.6e-50 | 170 | 377 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 +aee+++e+++ka+ ++ Wv ++ +++g+++ +++ s++++g a+ra+g+v ++++ ve+l d++ W +++++ e+ + g Traes_1AL_0BE456AC0.1 170 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCRGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMLPAGn 256 6899******************************************************9999999999.****************999 PP .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171 g+++l +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++ p+ +++vRae+lpSg+l++p+++g+s v++v+h d Traes_1AL_0BE456AC0.1 257 gGTIELVYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCDGGGSIVHIVDHLD 344 9********************************************9999998888899****************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqc 204 l++++++++lr+l++s+++ ++k+++a+l++ + Traes_1AL_0BE456AC0.1 345 LEAWSVPEVLRPLYESSRVVAQKMTTAALRHIR 377 *****************************9865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.9E-19 | 13 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.677 | 27 | 91 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.3E-16 | 29 | 95 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.27E-16 | 31 | 93 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 6.23E-17 | 32 | 92 | No hit | No description |
Pfam | PF00046 | 2.9E-16 | 33 | 90 | IPR001356 | Homeobox domain |
CDD | cd14686 | 8.30E-6 | 84 | 123 | No hit | No description |
PROSITE profile | PS50848 | 27.274 | 160 | 388 | IPR002913 | START domain |
CDD | cd08875 | 2.18E-72 | 164 | 380 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.0E-21 | 168 | 355 | IPR023393 | START-like domain |
SMART | SM00234 | 7.0E-38 | 169 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.1E-37 | 170 | 381 | No hit | No description |
Pfam | PF01852 | 1.8E-48 | 170 | 377 | IPR002913 | START domain |
Pfam | PF08670 | 5.5E-49 | 697 | 839 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 840 aa Download sequence Send to blast |
MAAAVAAMRC GSGSGSDGGG GGYDKGGMDS GKYVRYTPEQ VEALERVYAE CPKPTSTRRQ 60 QLLRECPILS NIEPRQIKVW FQNRRCRDKQ RKESSRLQAV NRKLSAMNKL LMEENERLQK 120 QVSQLVHENA YMKQQLQNPS LANDTSCESN VTTPPNPLRD ASNPAGLLAI AEETLTEFLS 180 KATGTAVDWV PMPGMKPGPD SFGIVAVSHG CRGVAARACG LVNLEPTKIV EILKDRPSWF 240 RDCRSLEVFT MLPAGNGGTI ELVYMQMYAP TTLVPARDFW TLRYTTTMED GSLVVCERSL 300 SGSGGGPSTA SAQQFVRAEM LPSGYLVRPC DGGGSIVHIV DHLDLEAWSV PEVLRPLYES 360 SRVVAQKMTT AALRHIRQIA QETSGEVVYA LGRQPAVLRT FSQRLSRGFN DAISGFNDDG 420 WSVMAGDGIE DVIIACNSKK IRSNNTAPNA FIAPGGVICA KASMLLQSVP PAVLVRFLRE 480 HRSEWADYNF DAYSASALKS SSCSLPGLRP MRFSGSQIIM PLAHTVENEE ILEVVRLEGQ 540 ALDEGLLSRD IHLLQFCTGI DEKSMGSCFQ LVFAPIDELF PDDAPLISSG FRVIPLDMKT 600 DGAPAGRTLD LASSLEAGST TVQASGGADD CNLRSVLTIA FQFPYEMHLQ DSVATMARQY 660 VRSIVSAVQR VSMAISPSRS GLNAEQKIIS GFPEAATLAR WICQSYRFHL GVELFRQADE 720 AGESLLRMLW DHEDAILCCS FKEKPVFTFA NEMGINMLET SFVALQDLSL DKIFDEAGRK 780 ALYSEIPKLM EQGFVYLPGG VCLSGMGRHV SFENAVAWKV VGEDNNVHCL AFCFVNWSFV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK362009 | 0.0 | AK362009.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2001M18. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020174778.1 | 0.0 | homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | A0A3B5XZA1 | 0.0 | A0A3B5XZA1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1AL_0BE456AC0.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|