PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF267200010CFD_t1 | ||||||||
Common Name | TRAES_3BF267200010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 26265 Da PI: 7.4963 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.2 | 2.2e-30 | 118 | 175 | 1 | 58 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 ldDgy+WrKYG+K+vk+s++pr+YYrC+s+gC+vkk+ver+++d+++v++tY g H+h TRAES3BF267200010CFD_t1 118 LDDGYRWRKYGKKMVKNSPNPRNYYRCSSEGCRVKKRVERDRDDERFVITTYDGVHDH 175 59*******************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.6E-32 | 105 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.84E-27 | 111 | 176 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.674 | 113 | 178 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.4E-35 | 118 | 177 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-23 | 119 | 175 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MSSYSSLLSV SPGEQIGGYA DGGDHDDMAA AANYLSSFCF DFGEEYYSLA EAATASYPLH 60 AQQQQPPTQA DSHHSGKAAS TTSSSQGLDN INTSLTSSDA RSKGSKIAFK TRSEMEVLDD 120 GYRWRKYGKK MVKNSPNPRN YYRCSSEGCR VKKRVERDRD DERFVITTYD GVHDHLAPLP 180 PRGCAGYSLS LAQTRVDEGS SPLPVQGRRC FLDTMKMHAA GSQQGCTPVP QPRKLERDN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-25 | 105 | 178 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT728909 | 0.0 | KT728909.1 Triticum aestivum clone LKc001 WRKY protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003566817.1 | 2e-69 | probable WRKY transcription factor 75 | ||||
TrEMBL | A0A446PRX6 | 1e-178 | A0A446PRX6_TRITD; Uncharacterized protein | ||||
TrEMBL | W5D5G9 | 1e-178 | W5D5G9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_E408A7B56.1 | 1e-179 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26170.1 | 6e-29 | WRKY DNA-binding protein 50 |
Publications ? help Back to Top | |||
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