PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF231500020CFD_t1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 25359.3 Da PI: 8.3235 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 107 | 129 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H TRAES3BF231500020CFD_t1 107 FVCEICHKGFQRDQNLQLHRRGH 129 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.12E-5 | 105 | 130 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.0E-5 | 106 | 129 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.637 | 107 | 129 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 109 | 129 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MPPMACGATG TGECTGSFSS VSSTVEGLGE EFRLPYHGKP PFLAGSPPEI REDDGDLRLV 60 IAGTSDSLST PPAATKKKKK RSLPGTPDPS AEVIALSPRT LMATNRFVCE ICHKGFQRDQ 120 NLQLHRRGHN LPWKLRQRGA EGGAAPRKRA AFGAYDGVVG FGVGGLMPGQ LYNDGANGGT 180 TRNAGPAVSG ADNPMDDERR RAAAGDDVRV VDYMGVEHQR TSYGSVSSAS PFADYTGPWP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066652 | 4e-88 | BT066652.1 Zea mays full-length cDNA clone ZM_BFb0043G06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196182.1 | 7e-73 | protein indeterminate-domain 2-like | ||||
TrEMBL | A0A446QD60 | 1e-174 | A0A446QD60_TRITD; Uncharacterized protein | ||||
STRING | Traes_3B_850142A99.2 | 1e-101 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP24616 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 5e-34 | C2H2-like zinc finger protein |
Publications ? help Back to Top | |||
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