PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF186800050CFD_t1
Common NameTRAES_3BF186800050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 362aa    MW: 38746.3 Da    PI: 8.0925
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF186800050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-13106150347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +WT+eE+ l++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  TRAES3BF186800050CFD_t1 106 PWTEEEHRLFLLGLQKLGKGDWRGISRSFVVSRTPTQVASHAQKY 150
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.565319IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.85599155IPR017930Myb domain
SuperFamilySSF466891.5E-16101156IPR009057Homeodomain-like
TIGRFAMsTIGR015574.1E-18102154IPR006447Myb domain, plants
SMARTSM007175.4E-11103153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-11103149IPR009057Homeodomain-like
CDDcd001673.01E-9106151No hitNo description
PfamPF002497.7E-11106150IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNARTCPA RGGGGVRLFG VHLTSPPVAA MKKSASMSCI ASSLGXXXXX  60
GSSPAAGPGG GAARGGGEGA PGYVSDDPMH ASCSTNGRAE RKKGTPWTEE EHRLFLLGLQ  120
KLGKGDWRGI SRSFVVSRTP TQVASHAQKY FIRQTNFSRR KRRSSLFDMV PEMPMDESPD  180
GTEEFMLCGT QDESTSSNKL SLFHLERQKE AECDKDLPTL QLRQHEESEY AGPSLEAPDL  240
EMNNGVSFKT TSVSTVPAFY PALLPVPLTL WPANVSNVEA SNATHEVLKP TPVNLKEAIK  300
ADEVVSMSKL SIGGGSSGSM EPSALSLQLT GPTNTRQSAF HVSPPMTRTD LSQGNNSPIH  360
AV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3716730.0AK371673.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2139L02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189174.10.0transcription factor MYB1R1-like
TrEMBLA0A077RQJ20.0A0A077RQJ2_WHEAT; Uncharacterized protein
STRINGMLOC_76271.30.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.16e-62MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]