PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF178300020CFD_t1

Common Name

TRAES_3BF178300020CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

GRAS

Protein Properties

Length: 501aa MW: 52975.6 Da PI: 4.9598

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF178300020CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	430.4	1.4e-131	87	449	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 lv+lL++cA av++gd++la a La + a ++++ + R+a +ft AL++rl+r + +p + +e+++ ++ f TRAES3BF178300020CFD_t1 87 LVHLLMSCAGAVEAGDHALAAAHLADANASlaAVSTASGIGRVAVHFTDALSRRLFR------SPATPP----ATDAEHAFLYHHF 162 68*********************9998876777779***************......222222....336799999 PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 +e++P+lkf+h+taNqaIlea++g++ vH+iDf+++qGlQWpaL+qaLa Rp+gpp lRiTg+g+p++ ++el+ +g rLa++A+ TRAES3BF178300020CFD_t1 163 YEACPYLKFAHFTANQAILEAFHGCDSVHVIDFSLMQGLQWPALIQALALRPGGPPFLRITGIGPPSPPGRDELRDVGLRLADLAR 248 ********************************************************************************** PP GRAS 171 elgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFler 256 +++v+f+f+ ++a++l+++++++L++ pgEa+aVn+vlqlhrll+++++++ +d+vL++v sl+Pk+++vveqeadhn++ Fl+r TRAES3BF178300020CFD_t1 249 SVRVRFSFRGVAANSLDEVHPWMLQIAPGEAVAVNSVLQLHRLLADTADQAP-IDAVLDCVASLQPKIFTVVEQEADHNKPGFLDR 333 ****************************************99998888.***************************** PP GRAS 257 flealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342 f+eal yysa+fdsl+a +++ + + + +++l+rei+++v++eg++r erhe l++Wr+rl++aG+++vpl+ +a qa++ll TRAES3BF178300020CFD_t1 334 FTEALFYYSAVFDSLDAA--SANGTGNAMAEAYLQREICDIVCNEGTARMERHEPLSQWRDRLGRAGLSAVPLGASALRQARMLLG 417 ***********988..6889999999999************************************************* PP GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++g++vee +g+l+lgW++rpL+s+SaWr TRAES3BF178300020CFD_t1 418 LFSGEGHSVEEAEGCLTLGWHGRPLFSASAWR 449 *****************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.954	61	429	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.9E-129	87	449	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence Send to blast
MAMGTFPFQW PMDPAPAPPS GLDGSLLPSL LPPPPAPVPD DGAAYYAAAD MQASSMPELA 60 APFPSRDAVA AELAMRRAEE EAAGIRLVHL LMSCAGAVEA GDHALAAAHL ADANASLAAV 120 STASGIGRVA VHFTDALSRR LFRSPATPPA TDAEHAFLYH HFYEACPYLK FAHFTANQAI 180 LEAFHGCDSV HVIDFSLMQG LQWPALIQAL ALRPGGPPFL RITGIGPPSP PGRDELRDVG 240 LRLADLARSV RVRFSFRGVA ANSLDEVHPW MLQIAPGEAV AVNSVLQLHR LLADTADQAP 300 IDAVLDCVAS LQPKIFTVVE QEADHNKPGF LDRFTEALFY YSAVFDSLDA ASANGTGNAM 360 AEAYLQREIC DIVCNEGTAR MERHEPLSQW RDRLGRAGLS AVPLGASALR QARMLLGLFS 420 GEGHSVEEAE GCLTLGWHGR PLFSASAWRA ATVVCDADGE DNHTSNNSNF SGSSGGGSDS 480 NNSSSSNGKC SGVVGASNMF L

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence Send to blast

MAMGTFPFQW PMDPAPAPPS GLDGSLLPSL LPPPPAPVPD DGAAYYAAAD MQASSMPELA  60
APFPSRDAVA AELAMRRAEE EAAGIRLVHL LMSCAGAVEA GDHALAAAHL ADANASLAAV  120
STASGIGRVA VHFTDALSRR LFRSPATPPA TDAEHAFLYH HFYEACPYLK FAHFTANQAI  180
LEAFHGCDSV HVIDFSLMQG LQWPALIQAL ALRPGGPPFL RITGIGPPSP PGRDELRDVG  240
LRLADLARSV RVRFSFRGVA ANSLDEVHPW MLQIAPGEAV AVNSVLQLHR LLADTADQAP  300
IDAVLDCVAS LQPKIFTVVE QEADHNKPGF LDRFTEALFY YSAVFDSLDA ASANGTGNAM  360
AEAYLQREIC DIVCNEGTAR MERHEPLSQW RDRLGRAGLS AVPLGASALR QARMLLGLFS  420
GEGHSVEEAE GCLTLGWHGR PLFSASAWRA ATVVCDADGE DNHTSNNSNF SGSSGGGSDS  480
NNSSSSNGKC SGVVGASNMF L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	6e-61	87	449	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Transcription coactivator of the zinc finger transcription factors GAF1/IDD2 and ENY/IDD1 in regulation of gibberellin homeostasis and signaling (PubMed:25035403). No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Positively regulates XERICO expression. In contrast to RGA, it is less sensitive to GA. Its activity is probably regulated by other phytohormones such as auxin and ethylene. {ECO:0000269\|PubMed:11487693, ECO:0000269\|PubMed:11606551, ECO:0000269\|PubMed:11606552, ECO:0000269\|PubMed:14973286, ECO:0000269\|PubMed:15128937, ECO:0000269\|PubMed:16034591, ECO:0000269\|PubMed:17933900, ECO:0000269\|PubMed:25035403, ECO:0000269\|PubMed:9389651}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192227.1	0.0	DELLA protein SLN1-like
Swissprot	Q9LQT8	1e-133	GAI_ARATH; DELLA protein GAI
TrEMBL	A0A077RTF9	0.0	A0A077RTF9_WHEAT; Uncharacterized protein
STRING	MLOC_73617.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP998	38	138

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	1e-123	GRAS family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gallego-Giraldo C, et al. Role of the gibberellin receptors GID1 during fruit-set in Arabidopsis. Plant J., 2014. 79(6): p. 1020-1032 [PMID:24961590] Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Marín-de la Rosa N, et al. Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins. PLoS Genet., 2015. 11(7): p. e1005337 [PMID:26134422] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Lee SA, et al. Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. Mol Plant, 2016. 9(6): p. 870-84 [PMID:26970019] Qu J,Kang SG,Hah C,Jang JC Molecular and cellular characterization of GA-Stimulated Transcripts GASA4 and GASA6 in Arabidopsis thaliana. Plant Sci., 2016. 246: p. 1-10 [PMID:26993231] Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Wang H, et al. The DELLA-CONSTANS Transcription Factor Cascade Integrates Gibberellic Acid and Photoperiod Signaling to Regulate Flowering. Plant Physiol., 2016. 172(1): p. 479-88 [PMID:27406167] Li W,Wang H,Yu D Arabidopsis WRKY Transcription Factors WRKY12 and WRKY13 Oppositely Regulate Flowering under Short-Day Conditions. Mol Plant, 2016. 9(11): p. 1492-1503 [PMID:27592586] Liu B,De Storme N,Geelen D Gibberellin Induces Diploid Pollen Formation by Interfering with Meiotic Cytokinesis. Plant Physiol., 2017. 173(1): p. 338-353 [PMID:27621423] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917] Zentella R, et al. The Arabidopsis O-fucosyltransferase SPINDLY activates nuclear growth repressor DELLA. Nat. Chem. Biol., 2017. 13(5): p. 479-485 [PMID:28244988] Zhang Y, et al. GA-DELLA pathway is involved in regulation of nitrogen deficiency-induced anthocyanin accumulation. Plant Cell Rep., 2017. 36(4): p. 557-569 [PMID:28275852] Zhang L,Chen L,Yu D Transcription Factor WRKY75 Interacts with DELLA Proteins to Affect Flowering. Plant Physiol., 2018. 176(1): p. 790-803 [PMID:29133369] Nelson SK,Ariizumi T,Steber CM Biology in the Dry Seed: Transcriptome Changes Associated with Dry Seed Dormancy and Dormancy Loss in the Arabidopsis GA-Insensitive sleepy1-2 Mutant. Front Plant Sci, 2017. 8: p. 2158 [PMID:29312402] Liu B,De Storme N,Geelen D Cold-Induced Male Meiotic Restitution in Arabidopsis thaliana Is Not Mediated by GA-DELLA Signaling. Front Plant Sci, 2018. 9: p. 91 [PMID:29459879] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486] Felipo-Benavent A, et al. Regulation of xylem fiber differentiation by gibberellins through DELLA-KNAT1 interaction. Development, 2019. [PMID:30389856] Wright DA, et al. Recovery of YAC-end sequences through complementation of an Escherichia coli pyrF mutation. Nucleic Acids Res., 1997. 25(13): p. 2679-80 [PMID:9185581]