PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF171300020CFD_t1 | ||||||||
Common Name | TRAES_3BF171300020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 574aa MW: 63964.1 Da PI: 9.2604 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.7 | 5e-14 | 37 | 116 | 12 | 96 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 ++ + +p+kf++++ggk s+t+ le+ +g ++v++ +k +++vl+ +GW+ Fv+a+ ++e+D+++F ++++s f v v TRAES3BF171300020CFD_t1 37 FRHGMAIPNKFIDHFGGK--ISRTIELESHNGSMYTVEV--SKLMNETVLRrRGWEAFVNAHSIEENDSLLFPHIEKSLF--EVLV 116 4566********888988..888****************..888888777659********************9987877..4444 PP | |||||||
2 | B3 | 45.5 | 1.4e-14 | 268 | 357 | 8 | 95 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkld.gr.se 89 +++++ + v+pk faeeh ++es+ ltl+ ++++W + +rk+++++vlt + W +F ++ng++egD +vF+ + g+ ++ TRAES3BF171300020CFD_t1 268 KMNTRIHTTVIPKLFAEEHF--PRESQNLTLQRpGKSKKWHPWFYIRKSQCGHVLTgSRWVGFLRDNGVQEGDLCVFQPVkGTgTR 351 566677889**********8..457778***995566****999779999999998678*******************55254455 PP E..EEE CS B3 90 felvvk 95 +++v+ TRAES3BF171300020CFD_t1 352 SKFTVH 357 555555 PP | |||||||
3 | B3 | 44.7 | 2.5e-14 | 487 | 568 | 16 | 99 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-SS.SEE..EEEEE-S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldgr.sefelvvkvfrk 99 ++++ +a+e+ +++ e + +tl ++ + Wev++ r ++g+ l+ GW++F+++n+L++ D+++F+ ++++ ++ +++v+++r+ TRAES3BF171300020CFD_t1 487 VSISCAYAAEY-LPPGERVAVTLV-RRKKAWEVEM--RARGGGRALAHGWRGFARDNRLRVQDVCLFQpMEKNhESLTMTVHIVRH 568 47777788888.455555566655.589*******..77777777***********************5558889********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.94E-19 | 22 | 122 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.3E-18 | 25 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.293 | 26 | 120 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.56E-16 | 27 | 118 | No hit | No description |
SMART | SM01019 | 8.0E-10 | 29 | 120 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-12 | 37 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.0E-17 | 256 | 359 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.33E-15 | 259 | 358 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.75E-16 | 261 | 359 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 261 | 362 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-5 | 263 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.8E-13 | 264 | 358 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.43E-15 | 463 | 569 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.92E-16 | 467 | 567 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 1.5E-17 | 467 | 570 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 6.4E-5 | 469 | 569 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.0E-12 | 473 | 568 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.546 | 513 | 569 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 574 aa Download sequence Send to blast |
MAGLASQMKR SCDCCKRYAD HLDGRMKCFC RRMTANFRHG MAIPNKFIDH FGGKISRTIE 60 LESHNGSMYT VEVSKLMNET VLRRRGWEAF VNAHSIEEND SLLFPHIEKS LFEVLVLDSD 120 DCEKVLPSAG IKVASCNVQE SSSVDYIDIS SSVGYIDISS SSGDDTTRSP GSKRFATCER 180 GDSSHPRKTA VNDSSSEEDS GEDSDAKAEE HSEDESSFGL DDVRQTPCTG RDYVLSLNAR 240 LSGAQEERVT RLLQAVRAKT PVFVAIMKMN TRIHTTVIPK LFAEEHFPRE SQNLTLQRPG 300 KSKKWHPWFY IRKSQCGHVL TGSRWVGFLR DNGVQEGDLC VFQPVKGTGT RSKFTVHLLH 360 EPLGANGSTG PKKRVGNTRV NSAAPERSTT AHGHGATTMA KAAPHPDAPT TLRVNKEQDD 420 GCNHGRQQAR QHPKPARPYV LSSTARLTEE QEREVDRTAR AIGSWVPAYV SVMNRSSVGV 480 GNRIYNVSIS CAYAAEYLPP GERVAVTLVR RKKAWEVEMR ARGGGRALAH GWRGFARDNR 540 LRVQDVCLFQ PMEKNHESLT MTVHIVRHSG KRKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188321.1 | 0.0 | B3 domain-containing protein Os03g0620400-like | ||||
TrEMBL | A0A077RQW7 | 0.0 | A0A077RQW7_WHEAT; Uncharacterized protein | ||||
STRING | EMT04827 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-13 | B3 family protein |
Publications ? help Back to Top | |||
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