PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF136700080CFD_t1
Common NameTRAES_3BF136700080CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 459aa    MW: 51446.4 Da    PI: 4.7048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF136700080CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.81.5e-2151302126
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.at 78 
                              ppGfrF Pt eel+ +yL + v++       e + +i  +diy  +P  L +   ++ +++ +wyf + ++ k ++ g r++r + 
  TRAES3BF136700080CFD_t1   5 PPGFRFTPTREELIRYYLDPWVADPGktpvAESQGIICVADIYGEDPAALTSrhrRFGHDDGNWYFLCVSRWKGNRaGGRTSRtVQ 90 
                              9*********************987766654455578888**********843445556777*****998877664499****555 PP

                      NAM  79 ksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                                g+W+  gk  +v +      g ++ + +    + +g+kt W+m+e+
  TRAES3BF136700080CFD_t1  91 GGGTWHGYGKRVAVPE-----AGHRQAFEYL---DARGRKTAWLMEEF 130
                              6999*****9877776.....899******9...678899*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-243151IPR003441NAC domain
PROSITE profilePS5100526.154152IPR003441NAC domain
PfamPF023652.0E-155130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNHAPPGFRF TPTREELIRY YLDPWVADPG KTPVAESQGI ICVADIYGED PAALTSRHRR  60
FGHDDGNWYF LCVSRWKGNR AGGRTSRTVQ GGGTWHGYGK RVAVPEAGHR QAFEYLDARG  120
RKTAWLMEEF GTVLPAATYA DGVRVLCRVH QTTRTVADDD VEERGESSKA ARSSKRRRRI  180
TADAKDEQKP LEMLAMEDKS EPLENVLAKD EADSWEILAM KDKAEPWEMI TMDEPSPLQM  240
LTNNLTCPQE MLTNNLTLPQ EILTNNLPWP LEMLTNSLPW PLEMLTNNLT LPLEMLSKNL  300
TLPLEMLTNN LALPLETLTK NLPEPAETVT KNLPSPLEIL GKNLPKLDIL TKEEPTTTTT  360
TFDQDSGAAN KEATPNAEME MPADAEWHSH YPELFEQKEP PPMEDVMKPL PSPTVQEFEQ  420
GAPPAAVVEE FGGVAWGWGG HGRRCLVRPM SLAWILPGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174179KRRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A080YUP00.0A0A080YUP0_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-12vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]