PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF118000010CFD_t1 | ||||||||
Common Name | TRAES_3BF118000010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 463aa MW: 52643.7 Da PI: 9.7749 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.4 | 6.9e-15 | 35 | 113 | 13 | 97 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 ++++++pk++++ +g+ + ++ le+++ s+++k+ k+++++vlt+GW +Fv+ +L+ gD+++F+++g+s f + +f TRAES3BF118000010CFD_t1 35 QQQMIIPKEYVRCLKGE--IPGEINLETRNRDSYTIKV--AKYQEKHVLTAGWPQFVENFHLQLGDSLLFRYNGDSLF--SIIIF 113 4679*******666666..5568***************..********************************998877..55555 PP | |||||||
2 | B3 | 39.4 | 1.1e-12 | 380 | 457 | 14 | 97 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 l++p ++ eeh g+ + +++ ++ ++W+ + + +++ y +++GW+ Fvk+n L+ gD+++++ ++++ ++ v+++ TRAES3BF118000010CFD_t1 380 FSLTVPITYGEEHFGD--G--KVICFQLGEKKWNACF--SSSRNDYRIERGWSTFVKDNSLNIGDICLLEPLSNQGSTMEVHII 457 5689999999999655..2..577788999*******..999999*************************88888888999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-19 | 19 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 20 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.801 | 23 | 116 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 9.49E-15 | 24 | 114 | No hit | No description |
SMART | SM01019 | 8.7E-7 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-12 | 36 | 113 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-5 | 150 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.28E-14 | 362 | 458 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-14 | 364 | 458 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-11 | 366 | 457 | No hit | No description |
SMART | SM01019 | 9.2E-5 | 367 | 460 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.574 | 367 | 460 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-11 | 376 | 457 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MSPSCGRCTR RDVYNYRNSE DENKHFLMLM LGDFQQQMII PKEYVRCLKG EIPGEINLET 60 RNRDSYTIKV AKYQEKHVLT AGWPQFVENF HLQLGDSLLF RYNGDSLFSI IIFDKLGREE 120 ASFVLVDPFP PQVQGRHNEI GSSKRNLFSV SRERSQERLN LKQRINVNTK FKLSRTKKSS 180 LCLQRDGGAC VQKFSLEIRD RIILFRYNGN SRFSVIILDE LGREKASSVV NLLPPRALER 240 HTNGAETVSR HPSDGPVDCS HPLMLMPPPA QFHQQQQAIL MQPPLNHSSS SKSSAGQGDG 300 SFSSHDHVRN ALGFRRVVRR NPTSSQKQQE KDGYITTDKT KLTSAQEQRV KDMVQTIRSR 360 RSGITIFVAL IGKANVHPAF SLTVPITYGE EHFGDGKVIC FQLGEKKWNA CFSSSRNDYR 420 IERGWSTFVK DNSLNIGDIC LLEPLSNQGS TMEVHIIHVN NGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020165134.1 | 1e-107 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A080YTZ0 | 0.0 | A0A080YTZ0_WHEAT; Uncharacterized protein | ||||
STRING | EMT28125 | 1e-163 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12482 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 2e-10 | B3 family protein |
Publications ? help Back to Top | |||
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