PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF110100110CFD_t1
Common NameTRAES_3BF110100110CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 347aa    MW: 37077.1 Da    PI: 8.5739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF110100110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM75.21.5e-23852203128
                      NAM   3 pGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk.......kvkaeekewyfFskrdkkyatgkrknratk 79 
                              pGf F Ptd elv++yL+++++g++  + +++ ++e+d+y ++P +L +       k+++e+k+wyfFs  + ++a+++rk r++ 
  TRAES3BF110100110CFD_t1  85 PGFAFCPTDRELVSFYLRPRISGQPlpNAAKHYFHEADVYATDPASLVAgrlpgpaKAQGESKNWYFFSLVKPRSAQDSRKCRIVG 170
                              9************************64334445**************7456788878888899********************766 PP

                      NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                +g+Wk+    ++v  ++g+++g  + +++    +++ +  +W+m e+++
  TRAES3BF110100110CFD_t1 171 ggKGTWKQERG-NDVAGAEGRAIGRLERFTYTPSPKEDKKPPEWLMTEFSV 220
                              56899**7755.6777779*************8888888899*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-2981241IPR003441NAC domain
PROSITE profilePS5100528.13183241IPR003441NAC domain
PfamPF023654.6E-1585219IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MASPPLLPSG PSSFYSSQGV LASFPNPWLE WEGTGHRLLS PYHSPPPPQT LAHGVAAAPL  60
PAPSTPPTSP PPVASPPPPP PQPAPGFAFC PTDRELVSFY LRPRISGQPL PNAAKHYFHE  120
ADVYATDPAS LVAGRLPGPA KAQGESKNWY FFSLVKPRSA QDSRKCRIVG GGKGTWKQER  180
GNDVAGAEGR AIGRLERFTY TPSPKEDKKP PEWLMTEFSV DQHGDGGQPT PVLCLCKIYQ  240
SPRFLKSASK NSASARKRKS PADESSAVKR QLLFPAPPPP PIPLLPVLFP PPPPPAPNLL  300
AEDDVWAHIG ADPELNFSVE EFTAPWPCSM TAAAPSLLGS GHGSQCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159855.11e-176NAC domain-containing protein 48-like
TrEMBLA0A077S2S90.0A0A077S2S9_WHEAT; Uncharacterized protein
STRINGEMT019081e-105(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-12NAC domain containing protein 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]