PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF105800110CFD_t1
Common NameTRAES_3BF105800110CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 1299aa    MW: 143612 Da    PI: 8.7678
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF105800110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004912051228223
                               EET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2    2 kCp..dCgksFsrksnLkrHirtH 23  
                               +Cp   Cgk F ++ +L +H ++H
  TRAES3BF105800110CFD_t1 1205 TCPvkGCGKKFFTHKYLLQHRKVH 1228
                               79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005452.7E-112768IPR003349JmjN domain
PROSITE profilePS5118313.5922869IPR003349JmjN domain
PfamPF023753.1E-122962IPR003349JmjN domain
SMARTSM005582.6E-9208364IPR003347JmjC domain
PROSITE profilePS5118420.218208353IPR003347JmjC domain
SuperFamilySSF511974.12E-11220292No hitNo description
PfamPF023733.2E-19238325IPR003347JmjC domain
SMARTSM003552211071129IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.74611301159IPR007087Zinc finger, C2H2
SMARTSM003552311301154IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028011321154IPR007087Zinc finger, C2H2
SMARTSM003551111811203IPR015880Zinc finger, C2H2-like
SMARTSM003550.5612041228IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.81912041233IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.5E-612051232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS00028012061228IPR007087Zinc finger, C2H2
SuperFamilySSF576671.73E-912211262No hitNo description
Gene3DG3DSA:3.30.160.603.0E-712331258IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.42912341263IPR007087Zinc finger, C2H2
SMARTSM003550.03112341258IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012361258IPR007087Zinc finger, C2H2
SuperFamilySSF576671.13E-612521286No hitNo description
Gene3DG3DSA:3.30.160.602.4E-712591286IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.86812641295IPR007087Zinc finger, C2H2
SMARTSM003552.912641290IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028012661290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1299 aa     Download sequence    Send to blast
MPSSSPPPPP PGASGDAVPP WLKALPLAPE FHPTAAEFAD PVAYLLRIEP AAAPFGICKV  60
VPPCARPPRK ATLANIARSL AANDKADADD HAQSPPSFPV RHQYLGLCPR RPRPALQTVW  120
LSARRYTLPQ FESRAAAARA PLLARLGVPA AKHQGDRLPP LDHEALFWRA ASADRPITVD  180
YASDMPGSGF PPCAARSAQG QQPAHVGETA WNMRTAARSP GSLLRFMRDE VPGVTTPMLY  240
VGMLFSWFAW HVEDHDLHSL NYMHLGAAKT WYGVPRDAAL AFEDVVRVHG YAGEVNPLEA  300
FATLGNKTTL LSPELLVGSG VPCCRWCYLL FLNKFDLIRV WLLTDAWFCA LEQVGAECRG  360
VCGHLPRIIS LRFQPWDPSI GAMEPRSSRL KEKKKGEGGQ LVKKLFVQNA IQDNELLSCL  420
LNDGSSCIIL PINAHDGPVL SALRSRSQLI PKSKLSDGLC SNGETLEALA RCTHNSHNAE  480
GDKADVISAA GLLDQGLLSC VSCGILSFSC VAVIKPRECA SKYFMSYDYN SINDQLVDSG  540
GCHLANAAGS EGTNGGILRP GFELHGTEIL PDAGPVTDSA PDLLASAYGN QPDTDEHNRN  600
KKIKVSHDSS ELDGTKIPSS SIKCQQRPSS QSSQCIGGSS ISNGPRGVRT RNKYQLKMAL  660
SQGFQLKNNY WTMEQKVQPE PSRSKETVKE PLDASGADND ARCSTAISVG GPRISTTTMD  720
NLNKPIVKID KDSARMHVFC LEHAVEVEKQ LQAIGGAHVI LLCRPVLFKI TVILSINVEY  780
LRIEAEARSL AAELEVEHGW KDIHFREANM EDRKMIEELL QDEESIPTSS DWAVKLGTNL  840
YYSANLAKSP LHNKQIPYNR VIYRAFGRSS PDNSPVKLEN CEGSRDTQKK IVLAGRWCGK  900
AWMSNQVHPF LAQRIESSEL EETDKSSGVE ASKRNSSTIT DVPKSSSKKR ENMAVEVTTD  960
TKRPRLAKGY SSKALKGVAE VSHPSPTAVV PRVSSRIADR ANRLKSEMTE EPKATSHSRT  1020
RPPKKFEVEA KKQMKMRKED KMMAPTAPKD DEERPSATKG GPSVGPATKL EFSQRKRRTR  1080
TDTMKQLKKA TGEERTPRDH PMHVEGYTCS IEGCSMSFDT RNKLSLHELD MCPVEGCGKK  1140
FFTHKFLLQH GKVHIETTKQ LKKATGEERA PRDHRMRVEG YTCTIEGCSM SFDTKKELSL  1200
HERDTCPVKG CGKKFFTHKY LLQHRKVHTD DRPLKCPWEG CDVAFKWAWA RTEHLSVHTG  1260
DRPYVCREPG CAETFRFISD FSRHKRETGH STKQTKTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A7e-581180129822140Lysine-specific demethylase REF6
6a58_A7e-581180129822140Lysine-specific demethylase REF6
6a59_A7e-581180129822140Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110731078QRKRRT
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A077RX800.0A0A077RX80_WHEAT; Uncharacterized protein
STRINGTraes_3B_4F4479FAF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-120relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]