PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF099700020CFD_t1
Common NameTRAES_3BF099700020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 372aa    MW: 40428.4 Da    PI: 6.0816
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF099700020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2193.9e-06213232120
                              EEETTTTEEESSHHHHHHHH CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                              ++C+ C+ksF+r  n++ H+
  TRAES3BF099700020CFD_t1 213 FVCHVCNKSFNRYNNMQMHM 232
                              89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.89E-5209236No hitNo description
Gene3DG3DSA:3.30.160.602.3E-5213232IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388213240IPR007087Zinc finger, C2H2
PROSITE patternPS000280215235IPR007087Zinc finger, C2H2
SuperFamilySSF576679.56E-5283317No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGLRTCSSME GELLVASPFF EWLKPPGSPS SSRSSSTFSS SSSSMASGPH AEDGGAAQVD  60
GSSVACLPLL RMLEEGKGAG GDHDHPAPGV KEEIMGSGAA GVLGPGVDLN IGLPVGGSCD  120
DDIMEEEGQE EDDDHDCDEE EEEEIDELKP EHGGCKVEAE EKDEHGEPMV SAGRSNSVSM  180
PEFGMVGAEG GVPMGCEYWI PTPAQILVGP VQFVCHVCNK SFNRYNNMQM HMWGHGREYR  240
KGPESLKGTQ TLALLKLPCY CCAAGCRNSV AHPRARPLKD FRTLQTHYKR KHGARPFRCR  300
RCAKPFAVKG DWRTHEKNCG KRWFCACGSD FKHKRSLNDH VRSFGGDHLP VALDGATAPA  360
PAEDRRIIRF QR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3592220.0AK359222.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1092D14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182641.10.0protein TRANSPARENT TESTA 1-like
SwissprotQ8W0302e-91ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A446Q5Y40.0A0A446Q5Y4_TRITD; Uncharacterized protein
TrEMBLW5CWW40.0W5CWW4_WHEAT; Uncharacterized protein
STRINGTraes_3B_6AE438C3D.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.12e-92WIP domain protein 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]