PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF096900170CFD_t1

Common Name

TRAES_3BF096900170CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 387aa MW: 41355.3 Da PI: 7.6022

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF096900170CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.5	4.8e-08	122	142	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C +aHg TRAES3BF096900170CFD_t1 122 ACPDFRK-GGCKRGDACEYAHG 142 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	3.4E-5	117	143	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.103	118	144	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.6E-5	121	144	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.7E-6	122	142	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	152	175	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	152	176	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MMMMSEGVSV PPWGNHLPVS GVDAGGGGGG DETPFLFAAL RQYLPCNDVL GGAGAGAEDE 60 DEAAAVAAAV DAYACDEFRM YDFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRKYHYSG 120 TACPDFRKGG CKRGDACEYA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRA 180 MPSQHSSPRS TPLSPLAESY DGSPLRRQAF ESYLSKSIMS SSPTSTLLSS PPKSPPSESP 240 PLSPDGAASF RRGSCGSWPG VGSPVNDVLA SLRQLRLAKA QASPSGGWSG YPTSPAAYGS 300 PKAAGLYSLP TTPMGAQTGA SSFMPNLEPL NLRFLDDEEP VQRVESGRAL REKVFERLSR 360 DGAAPRSCEV GAGAGGPDVG WVSDLIN

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MMMMSEGVSV PPWGNHLPVS GVDAGGGGGG DETPFLFAAL RQYLPCNDVL GGAGAGAEDE  60
DEAAAVAAAV DAYACDEFRM YDFKVRRCAR GRSHDWTECP FAHPGEKARR RDPRKYHYSG  120
TACPDFRKGG CKRGDACEYA HGVFECWLHP ARYRTQPCKD GTACRRRVCF FAHTPDQLRA  180
MPSQHSSPRS TPLSPLAESY DGSPLRRQAF ESYLSKSIMS SSPTSTLLSS PPKSPPSESP  240
PLSPDGAASF RRGSCGSWPG VGSPVNDVLA SLRQLRLAKA QASPSGGWSG YPTSPAAYGS  300
PKAAGLYSLP TTPMGAQTGA SSFMPNLEPL NLRFLDDEEP VQRVESGRAL REKVFERLSR  360
DGAAPRSCEV GAGAGGPDVG WVSDLIN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020192020.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	0.0	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A077RQC7	0.0	A0A077RQC7_WHEAT; Uncharacterized protein
TrEMBL	A0A446PGC3	0.0	A0A446PGC3_TRITD; Uncharacterized protein
STRING	MLOC_63525.2	0.0	(Hordeum vulgare)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	5e-82	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]