PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF095600020CFD_t1
Common NameTRAES_3BF095600020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 968aa    MW: 107417 Da    PI: 8.8443
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF095600020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.70.0016850872121
                              EEET..TTTEEESSHHHHHHHHH CS
                  zf-C2H2   1 ykCp..dCgksFsrksnLkrHir 21 
                              y+C+   C++sF +k +L  H r
  TRAES3BF095600020CFD_t1 850 YTCTieGCSMSFDTKKELSLHER 872
                              99*******************98 PP
2zf-C2H212.80.00035874897223
                              EET..TTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                              +Cp   Cgk F ++ +L +H ++H
  TRAES3BF095600020CFD_t1 874 TCPvkGCGKKFFTHKYLLQHRKVH 897
                              79999*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035522776798IPR015880Zinc finger, C2H2-like
SMARTSM0035523799823IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.746799828IPR007087Zinc finger, C2H2
PROSITE patternPS000280801823IPR007087Zinc finger, C2H2
SMARTSM0035511850872IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.819873902IPR007087Zinc finger, C2H2
SMARTSM003550.56873897IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.0E-6874901IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280875897IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-9890931No hitNo description
Gene3DG3DSA:3.30.160.602.2E-7902927IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.031903927IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.429903932IPR007087Zinc finger, C2H2
PROSITE patternPS000280905927IPR007087Zinc finger, C2H2
SuperFamilySSF576677.54E-7921955No hitNo description
Gene3DG3DSA:3.30.160.601.9E-7928955IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9933959IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.868933964IPR007087Zinc finger, C2H2
PROSITE patternPS000280935959IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 968 aa     Download sequence    Send to blast
MNAGEFVVTF PGSYHCGFSH GEFVVTFPGS YHCGFSHVSL TQSRKDPSIG AMEPRSSRLK  60
EKKKGEGGQL VKKLFVQNAI QDNELLSCLL NDGSSCIILP INAHDGPVLS ALRSRSQLIP  120
KSKLSDGLCS NGETLEALAR CTHNSHNAEG DKADVISAAG LLDQGLLSCV SCGILSFSCV  180
AVIKPRECAS KYFMSYDYNS INDQLVDSGG CHLANAAGSE GTNGGILRPG FELHGTEILP  240
DAGPVTDSAP DLLASAYGNQ PDTDEHNRNK KIKVSHDSSE LDGTKIPSSS IKCQQRPSSQ  300
SSQCIGGSSI SNGPRGVRTR NKYQLKMALS QGFQLKNNYW TMEQKVQPEP SRSKETVKEP  360
LDASGADNDA RCSTAISVGG PRISTTTMDN LNKPIVKIDK DSARMHVFCL EHAVEVEKQL  420
QAIGGAHVIL LCRPVLFKIT VILSINVEYL RIEAEARSLA AELEVEHGWK DIHFREANME  480
DRKMIEELLQ DEESIPTSSD WAVKLGTNLY YSANLAKSPL HNKQIPYNRV IYRAFGRSSP  540
DNSPVKLENC EGSRDTQKKI VLAGRWCGKA WMSNQVHPFL AQRIESSELE ETDKSSGVEA  600
SKRNSSTITD VPKSSSKKRE NMAVEVTTDT KRPRLAKGYS SKALKGVAEV SHPSPTAVVP  660
RVSSRIADRA NRLKSEMTEE PKATSHSRTR PPKKFEVEAK KQMKMRKEDK MMAPTAPKDD  720
EERPSATKGG PSVGPATKLE FSQRKRRTRT DTMKQLKKAT GEERTPRDHP MHVEGYTCSI  780
EGCSMSFDTR NKLSLHELDM CPVEGCGKKF FTHKFLLQHG KVHIETTKQL KKATGEERAP  840
RDHRMRVEGY TCTIEGCSMS FDTKKELSLH ERDTCPVKGC GKKFFTHKYL LQHRKVHTDD  900
RPLKCPWEGC DVAFKWAWAR TEHLSVHTGD RPYVCREPGC AETFRFISDF SRHKRETGHS  960
TKQTKTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-5884996422137Lysine-specific demethylase REF6
6a58_A2e-5884996422137Lysine-specific demethylase REF6
6a59_A2e-5884996422137Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1742747QRKRRT
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-27' (H3K27me) of histone H3 with a specific activity for H3K27me3 and H3K27me2. No activity on H3K4me3, H3K9me3, H3K27me1 and H3K36me3. Involved in biotic stress response. May demethylate H3K27me3-marked defense-related genes and increase their basal and induced expression levels during pathogen infection. {ECO:0000269|PubMed:24280387}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress, abscisic acid (ABA), jasmonic acid (JA), the ethylene precursor ACC and infection by the bacterial pathogen Xanthomonas oryzae pv. oryzae. {ECO:0000269|PubMed:24280387}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164795.10.0lysine-specific demethylase JMJ705-like
SwissprotQ5N7120.0JM705_ORYSJ; Lysine-specific demethylase JMJ705
TrEMBLA0A077S3050.0A0A077S305_WHEAT; Uncharacterized protein
STRINGTraes_3B_4F4479FAF.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53463246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.11e-55relative of early flowering 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]