PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF081400030CFD_t1 | ||||||||
Common Name | TRAES_3BF081400030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 25035.5 Da PI: 6.0624 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 52.9 | 7.4e-17 | 28 | 84 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-.SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkvers.aedpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s fpr Yr ++C + k v+++ +edp ++++tY+ eH+++ TRAES3BF081400030CFD_t1 28 DGHLWRKYGQKNIKDSVFPRCSYR-EDKQCLASKLVQQEnHEDPPLFKVTYTYEHTCN 84 9*******************9999.4679*******9752689*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.22E-16 | 19 | 85 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 4.8E-17 | 20 | 84 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.5E-25 | 26 | 85 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 12.266 | 28 | 86 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.2E-19 | 28 | 83 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAMGWFLWAW RWKDRPSWVK HTFTPHFDGH LWRKYGQKNI KDSVFPRCSY REDKQCLASK 60 LVQQENHEDP PLFKVTYTYE HTCNTAPVPT PDVVAELPAP ATGDALFLRF NSTGAGHRDA 120 HRMEQERHYQ QPAAPGWPSM MLSFDSNSQQ HEQCTFPSEL PPTASSSSFS TEGLPAPPST 180 TDGGGDGFST WDSLRYGLND HVHFGDHSYL PNSGNDGDDN Y |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186009.1 | 1e-137 | probable WRKY transcription factor 46 | ||||
TrEMBL | A0A077RWK2 | 1e-165 | A0A077RWK2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3AL_2297D6E18.1 | 1e-144 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 5e-14 | WRKY DNA-binding protein 46 |
Publications ? help Back to Top | |||
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