PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF073700060CFD_t1 | ||||||||
Common Name | TRAES_3BF073700060CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26016.9 Da PI: 5.3398 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 58 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr + +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++aa+++++g TRAES3BF073700060CFD_t1 58 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDAAALSIKG 106 9****998.**********843...6***********************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-31 | 57 | 115 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.655 | 57 | 114 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-34 | 57 | 120 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.6E-12 | 57 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.90E-20 | 58 | 116 | No hit | No description |
SuperFamily | SSF54171 | 2.68E-20 | 58 | 115 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-9 | 58 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MAASEQSSES SSTSCTSSYS TSSCSPRADD KKRNGGGKRK RAAAADEEPA PAAAAASYRG 60 VRMRAWGKWV SEIREPRKKS RIWLGTFPCP EMAARAHDAA ALSIKGARAV LNFPDLAPAL 120 PRPASLAPCD VQAAAARAAL MHDHDHQCCS ASTSPAAAPD SARGNAPAPC DQPAARDEPE 180 HEPPFQPSQG NEQQLTAAQV EMVFDELAPL WVENVVDFAP SDHCWTAYDC LDPIGFQPLL 240 WEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-16 | 52 | 114 | 9 | 72 | Ethylene-responsive transcription factor ERF096 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ353852 | 0.0 | DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds. | |||
GenBank | GU785008 | 0.0 | GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020183719.1 | 1e-119 | ethylene-responsive transcription factor ERF039-like | ||||
TrEMBL | A0A3B6FMY0 | 1e-174 | A0A3B6FMY0_WHEAT; Uncharacterized protein | ||||
TrEMBL | E2EBX9 | 1e-175 | E2EBX9_TRITD; Drought responsive element binding transcription factor 2 | ||||
TrEMBL | Q27W81 | 1e-175 | Q27W81_WHEAT; AP2 domain transcription factor TaDREB2 | ||||
STRING | Traes_3B_82E1F5484.1 | 1e-176 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 4e-32 | ERF family protein |
Publications ? help Back to Top | |||
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