PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF072800060CFD_t1 | ||||||||
Common Name | TRAES_3BF072800060CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 787aa MW: 89035.3 Da PI: 10.0579 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41.4 | 2.5e-13 | 209 | 279 | 17 | 88 |
E--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 17 vlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 +l kfa h g k+++++l+l ++rsW kl r +s++ kGW +F+++n+L+egD ++Fkl +++ TRAES3BF072800060CFD_t1 209 YLVEKFAGGHpcG--KRRGVELVLLReGKSRSWCTKL--RHSSRGSRVLKGWPSFARDNKLREGDLCLFKLLKSE 279 5667788888543..557777777663777*******..66666655556********************88743 PP | |||||||
2 | B3 | 34.1 | 5e-11 | 309 | 389 | 13 | 99 |
TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + lvlp f+++ ggk +t++l+ ++g ++v + + + +r++l+ GW F +an+++e+ +++F++ g+ f v++f+ TRAES3BF072800060CFD_t1 309 MHSLVLPDWFVSQLGGKI--WRTIKLQAPDGIIYDVGV--SENMNRIILKFGWAAFLDANEIEENYSLMFRYLGNALF--EVTIFD 388 4669*******9999995..559***************..********************************998777..888887 PP S CS B3 99 k 99 + TRAES3BF072800060CFD_t1 389 S 389 6 PP | |||||||
3 | B3 | 38.8 | 1.7e-12 | 700 | 784 | 19 | 99 |
-HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-..TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 19 pkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvlt..kGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 k a+ h k +++ l+l ++ sW k++++ + ++ ++ kGW F+++n+L+egD ++Fkl+ + + ++v++++r+ TRAES3BF072800060CFD_t1 700 VQKSASGHHRGKSSQVSLVLHReGRSGSWPTKMQHSMQHTTHAMRilKGWTFFARDNRLREGDLCLFKLITNkEPLTMVIHIIRR 784 445555563334566778877735569******77555555554455***********************998*********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.69 | 1 | 100 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.57E-8 | 1 | 102 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 7.105 | 1 | 98 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-9 | 1 | 86 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.71E-7 | 1 | 95 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.5E-14 | 173 | 281 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-12 | 174 | 280 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.08E-12 | 177 | 285 | No hit | No description |
SMART | SM01019 | 3.8E-7 | 185 | 290 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-11 | 208 | 279 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.42 | 229 | 290 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.659 | 297 | 390 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.65E-15 | 299 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 4.8E-6 | 300 | 390 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-14 | 304 | 391 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.46E-11 | 305 | 388 | No hit | No description |
Pfam | PF02362 | 6.3E-9 | 309 | 389 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.7E-12 | 468 | 577 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.18E-12 | 472 | 582 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.03E-11 | 475 | 577 | No hit | No description |
SMART | SM01019 | 0.036 | 477 | 580 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.74 | 477 | 580 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-8 | 478 | 578 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.5E-12 | 660 | 786 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.15E-11 | 661 | 787 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.95E-9 | 666 | 783 | No hit | No description |
SMART | SM01019 | 0.016 | 668 | 785 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-10 | 700 | 784 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.757 | 717 | 785 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 787 aa Download sequence Send to blast |
MKKSNVKRHA TLIIHKDYAL EHFPCEDTTA VLQLPGKNKD WKCTFRIRPS GTSDAGRRNL 60 FLYNFACDNH IREGDICLFQ PMTNVKQRRF IVTVHVLDKV NIDHSPGRRT DIGSNHGRKR 120 AKMGAVKDKP HTDEHEVSED SEGAFGRLFM LSDKACPTPA QRKKLLKKVK KIKFKPPFYV 180 AIMSKSTVCQ RGSQNNPMLR FGSQYATRYL VEKFAGGHPC GKRRGVELVL LREGKSRSWC 240 TKLRHSSRGS RVLKGWPSFA RDNKLREGDL CLFKLLKSEE LLDVSKMSNP CECCERKIRF 300 IRKINGNFMH SLVLPDWFVS QLGGKIWRTI KLQAPDGIIY DVGVSENMNR IILKFGWAAF 360 LDANEIEENY SLMFRYLGNA LFEVTIFDSN GKEKALCSRY ADNSSSSQDG VTQSSAGEGS 420 DSGGSQKESL YCYKKSAKMP AVSYSSEEFS GRCYLTEAQK AKVLALVKKI RPEIPVLVVQ 480 MKKSNVEQSG TLVLCKDYAR KHLPCEGTNI ILQLPRKNKG WKCKFHIRPS GTSDAGRRNL 540 SLGNFVPDNH IREGDICLFE PMTIVKEKRF TMTVHLLHKA GIDHSPSART GVGSNHGRTS 600 TKMAGAMEEP PTDGEEYSWE HEEHGVSDDS EGGSEPRFML ADKASLTRAQ EKKVLEKVEE 660 IESEVPLYVA IMSKSNVYRG GGGNTPTLHF GYQYTGRYLV QKSASGHHRG KSSQVSLVLH 720 REGRSGSWPT KMQHSMQHTT HAMRILKGWT FFARDNRLRE GDLCLFKLIT NKEPLTMVIH 780 IIRRKEC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HE996523 | 0.0 | HE996523.1 Triticum aestivum cv. Arina SNP, chromosome 3B, clone Taes_arina_ctg_58237. | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198703.1 | 0.0 | B3 domain-containing protein Os03g0619600-like | ||||
TrEMBL | A0A077RTE2 | 0.0 | A0A077RTE2_WHEAT; Uncharacterized protein | ||||
STRING | EMT02000 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP585 | 31 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-11 | B3 family protein |
Publications ? help Back to Top | |||
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