PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF071100040CFD_t1
Common NameTRAES_3BF071100040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 519aa    MW: 56530.1 Da    PI: 5.9097
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF071100040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.69e-1101465181374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalkl 83 
                              lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +          + + s+     +  al +
  TRAES3BF071100040CFD_t1 146 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsmaFCVPRSSCLDGARGEALAV 231
                              689**************************************************996655543331113444444447778888899 PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                               +e++P+l+f+h++aN  Ilea+ege+ vH++D+++++Gl    QW aLl++La+R++g+p ++R+Tgvg+    + ++++++g+ 
  TRAES3BF071100040CFD_t1 232 AYELCPYLRFAHFVANTSILEAFEGETNVHVVDLGMTMGLnrghQWRALLDSLATRASGKPaRVRVTGVGA----RVDTMRAVGRE 313
                              **********************************9865433333*************77666*********....9********** PP

                     GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                              L+ +Aeelg+++ef + v ++le+l++++L v+ +Ea+a+n+vl+lh +++es    +   +vL+++++lsPk +v+veq+a hn+
  TRAES3BF071100040CFD_t1 314 LEAYAEELGMTLEFMA-VDRTLESLHVDDLGVEADEAVAINSVLELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNG 395
                              ****************.799******************************88877777...8************************ PP

                     GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                              + Fl rf+eal+yy+alfd+l+a lpr +  r+ vE++ +g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++   a++
  TRAES3BF071100040CFD_t1 396 PFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHFGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQAMPFKM--AAK 479
                              ******************************************************************************975..456 PP

                     GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              a+  l++ + + gy+v ee+g+lvlgWk++p++++S+W+
  TRAES3BF071100040CFD_t1 480 AREWLEENAgGSGYTVAEEKGCLVLGWKGKPVIAASCWK 518
                              7777877777****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.351120499IPR005202Transcription factor GRAS
PfamPF035143.1E-107146518IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MPMLPSSFTT SSSWQSHQDA SSICTNQEPD YDHPYYFGIE EVAVDADELE LGLRAHKATR  60
VDYLSSPYQA SWPPAQADLE SSRVRKTKQF RDVLETCKQK VEAMEAMERS SSPVGSGGFE  120
EQGEALVAVD DVRAGGGGSG ADGMRLVQLL VACAEAVACR DRAQAAALLR ELQVGAPVHG  180
TAFQRVASCF VQGLADRLAL AHPPALGPAS MAFCVPRSSC LDGARGEALA VAYELCPYLR  240
FAHFVANTSI LEAFEGETNV HVVDLGMTMG LNRGHQWRAL LDSLATRASG KPARVRVTGV  300
GARVDTMRAV GRELEAYAEE LGMTLEFMAV DRTLESLHVD DLGVEADEAV AINSVLELHC  360
VVKESRGALN SVLQTIRKLS PKAFVLVEQD AGHNGPFFLG RFMEALHYYA ALFDALDAAL  420
PRYDARRARV EQFHFGAEIR NVVGCEGAAR VERHERADQW RRRMSRAGFQ AMPFKMAAKA  480
REWLEENAGG SGYTVAEEKG CLVLGWKGKP VIAASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5815351726378Protein SCARECROW
5b3h_A1e-5815351725377Protein SCARECROW
5b3h_D1e-5815351725377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195276.10.0DELLA protein SLN1-like
TrEMBLA0A077RX510.0A0A077RX51_WHEAT; Uncharacterized protein
TrEMBLA0A446Q7L90.0A0A446Q7L9_TRITD; Uncharacterized protein
STRINGBRADI2G57940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-58RGA-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]