PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF071100020CFD_t1
Common NameTRAES_3BF071100020CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family GRAS
Protein Properties Length: 517aa    MW: 55967.6 Da    PI: 6.4599
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF071100020CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.26.5e-1071445161374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetsekn..sseelaalkl 83 
                              lv+lL++cAeav+ +d ++a alL +l+  a  +g+++qR+a++f+++La rla   +        + + ++++     +  al +
  TRAES3BF071100020CFD_t1 144 LVQLLVACAEAVACRDRAQAAALLRELQVGAPVHGTAFQRVASCFVQGLADRLALAHPPALGPAsMAFSVPRSSclDGARGEALAV 229
                              689***************************************************96665554431333333333456677788888 PP

                     GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGl....QWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetger 164
                               +e++P+l+f+h++aN  Ilea++ge+ vH++D+++++Gl    QW aLl+ La+R++g+p ++R+Tgvg+    + ++++++g+ 
  TRAES3BF071100020CFD_t1 230 AYELCPYLRFAHFVANASILEAFDGESNVHVVDLGMTMGLnrghQWRALLDGLATRTGGKPaRVRVTGVGA----RVDTMRAVGRE 311
                              **********************************9865433333*************77666*********....9********** PP

                     GRAS 165 LakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                              ++ +Aeelg+ +ef++ v ++le+l++++L ++ +Ea+a+n+vl+lh +++es    +   +vL+++++lsPk +v+veq+a hn+
  TRAES3BF071100020CFD_t1 312 IEAYAEELGMCLEFRA-VDRTLESLHVDDLCIDAHEAVAINSVLELHCVVKESRGALN---SVLQTIRKLSPKAFVLVEQDAGHNG 393
                              ****************.799******************************88877777...8************************ PP

                     GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                              + Fl rf+eal+yy+alfd+l+a lpr +  r+ vE++  g ei+nvv cega+r+erhe++ +Wr+r+++aGF+++p++   a++
  TRAES3BF071100020CFD_t1 394 PFFLGRFMEALHYYAALFDALDAALPRYDARRARVEQFHYGAEIRNVVGCEGAARVERHERADQWRRRMSRAGFQSLPIKM--AAK 477
                              ******************************************************************************975..456 PP

                     GRAS 337 aklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              a+  l++ + + gy+v ee+g+lvlgWk++p++++S+W+
  TRAES3BF071100020CFD_t1 478 AREWLEENAgGSGYTVAEEKGCLVLGWKGKPVIAASCWK 516
                              7777777777****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.007118497IPR005202Transcription factor GRAS
PfamPF035142.3E-104144516IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MVGMARNHFP TSWQTQEGAS ICTNQELDYD HPHYLGIEEV ALDGVELELG PRASKATKVD  60
YLSSPYHATW PPAQADFESS RVRKTKQFRD VLETCKQKVE AMEALEHSPP VAGGGFEEQA  120
GEAVVAAGDV GGGGGSGGAD GMRLVQLLVA CAEAVACRDR AQAAALLREL QVGAPVHGTA  180
FQRVASCFVQ GLADRLALAH PPALGPASMA FSVPRSSCLD GARGEALAVA YELCPYLRFA  240
HFVANASILE AFDGESNVHV VDLGMTMGLN RGHQWRALLD GLATRTGGKP ARVRVTGVGA  300
RVDTMRAVGR EIEAYAEELG MCLEFRAVDR TLESLHVDDL CIDAHEAVAI NSVLELHCVV  360
KESRGALNSV LQTIRKLSPK AFVLVEQDAG HNGPFFLGRF MEALHYYAAL FDALDAALPR  420
YDARRARVEQ FHYGAEIRNV VGCEGAARVE RHERADQWRR RMSRAGFQSL PIKMAAKARE  480
WLEENAGGSG YTVAEEKGCL VLGWKGKPVI AASCWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-5715151526378Protein SCARECROW
5b3h_A2e-5715151525377Protein SCARECROW
5b3h_D2e-5715151525377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020195268.10.0DELLA protein GAI1-like
TrEMBLA0A077RQJ00.0A0A077RQJ0_WHEAT; Uncharacterized protein
STRINGBRADI2G57940.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56403354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.15e-58GRAS family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]