PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF070600040CFD_t1
Common NameTRAES_3BF070600040CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 314aa    MW: 36044.2 Da    PI: 7.2343
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF070600040CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011109131223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +C+ C+++++++ +L  Hi+  H
  TRAES3BF070600040CFD_t1 109 SCSVCSRVYPTSRLLSIHISEaH 131
                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551181106IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083106IPR007087Zinc finger, C2H2
SMARTSM003555108131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280110131IPR007087Zinc finger, C2H2
SMARTSM003550.2146171IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280148171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MQQNPAEAME VSAPSEAGAP KDMGPWLGFW EVSRRRLTPD DPFFAAGDME RELLAKHVAL  60
DLSDDDRYQL EKMDVASVSM VCCPIAGCGA HLDCLEDFED HYSTRHTASC SVCSRVYPTS  120
RLLSIHISEA HDSFFQAKVA RGFPMYECLV EGCGEKLKTY KSRQQHLVDK HQFPNSFEFF  180
KRAQPSQRHR QKYHRRQTAY KGEETRDTVM DVDGKNPRQS KSKYRPKQRD HKEPKENEHC  240
HKESKENEHH EKEAKESDME VEQKIDELSS AVSRLSTADS VPSSVTFGHR RSRGLTFVPR  300
SIRQNKQVSQ PEAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3694620.0AK369462.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2091M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201569.10.0zinc finger protein 511
TrEMBLA0A446PFP70.0A0A446PFP7_TRITD; Uncharacterized protein
TrEMBLW5CS500.0W5CS50_WHEAT; Uncharacterized protein
STRINGTraes_3B_2A6FA5E22.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109112629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.12e-91zinc ion binding;nucleic acid binding;zinc ion binding
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]