PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF066400010CFD_t1 | ||||||||
Common Name | TRAES_3BF066400010CFD_c1, Vp-1B, Vp-1Bb | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 688aa MW: 72802.1 Da PI: 8.4572 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.9 | 9.2e-19 | 532 | 628 | 2 | 95 |
EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 +kvl++sdv+++gr+vlpkk ae+h ++k+ ++ + +ed ++++W++++++ ++ks++y+l+ ++ +Fv++n+L+egDf+v+ TRAES3BF066400010CFD_t1 532 QKVLKQSDVGTLGRIVLPKKEAETHlpELKTGDGISIPIEDiGTSQVWSMRYRFwpNNKSRMYLLE-NTGDFVRSNELQEGDFIVL 616 79*************************99999*********7777*******99777777777777.******************* PP EE-SS.SEE..EEE CS B3 83 kldgr.sefelvvk 95 + ++ ++++++++ TRAES3BF066400010CFD_t1 617 Y--SDvKSGKYLIR 628 *..55588877776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.6E-27 | 524 | 637 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10015 | 4.35E-30 | 529 | 630 | No hit | No description |
SuperFamily | SSF101936 | 8.5E-22 | 530 | 626 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 10.137 | 531 | 633 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-18 | 531 | 633 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-15 | 532 | 627 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009657 | Biological Process | plastid organization | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0031930 | Biological Process | mitochondria-nucleus signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0001076 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor binding | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence Send to blast |
MDASAGSSPP RHSQGDAPRR GGPHRGKGPA VEIRQGEDDF MFAQDTFPAL PDFPCLSSPS 60 SSTFSSSSSS NSSSAFAAPA GAGGRGAEGA RGEPSEPAAA GDGMDDLSDI DHLLDFASIN 120 DDVPWDDEPL FPDVGMMLED VISEQQLQQP PAGHGTAGRT ASHAASGGGE DAFMGGGGTG 180 SAADDLPLFF MEWLKNNRDC ISAEDLRSIR LRRSTIEAAA ARLGGGRQGT MQLLKLILTW 240 VQNHHLQKKR PRVGAMDQEA PPAGGQLPSP GANPGYEFPA ETGAAAATSW MPYQAFSPTG 300 SYGGEAIYPF QQGCSTSSVA VSSQPFSPPA APDMHAGAWP LQYAAFVPAG ATSAGTQTYP 360 MPPPGAVPQP FAAPGFAGQF PQRMEPAATR EARKKRMARQ RRLSCLQQQR SQQLNLSQIQ 420 TGGFPQEQSP RAAHSAPVTP PSSGWGGLWT QQAVQGQLMV QVPNPLSTKS NSSRQKQQKP 480 SPDAAARPPS GGAATPHRPG QASASNKQRQ QGARTPAAAP AAGDKNLRFL LQKVLKQSDV 540 GTLGRIVLPK KEAETHLPEL KTGDGISIPI EDIGTSQVWS MRYRFWPNNK SRMYLLENTG 600 DFVRSNELQE GDFIVLYSDV KSGKYLIRGV KVRAQQDLAK HKNASPEKGG ASDVKAGGED 660 GGCKEKSPHG VRRSRQEASS MNQMAVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9b_A | 1e-36 | 527 | 638 | 1 | 112 | B3 domain-containing transcription factor FUS3 |
6j9b_D | 1e-36 | 527 | 638 | 1 | 112 | B3 domain-containing transcription factor FUS3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may participate in abscisic acid-regulated gene expression during seed development. May be required for seed maturation and dormancy induction. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00083 | PBM | Transfer from AT3G24650 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ640559 | 0.0 | FJ640559.1 Triticum aestivum cultivar Zhongyou 9507 VIVIPAROUS1 protein (Vp-1B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155421.1 | 0.0 | B3 domain-containing protein VP1 isoform X1 | ||||
Swissprot | P37398 | 0.0 | VIV_ORYSJ; B3 domain-containing protein VP1 | ||||
TrEMBL | A1XPK8 | 0.0 | A1XPK8_WHEAT; VIVIPAROUS1 protein | ||||
STRING | MLOC_69727.2 | 0.0 | (Hordeum vulgare) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7529 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24650.1 | 5e-59 | B3 family protein |