PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF065400200CFD_t1 | ||||||||
Common Name | TRAES_3BF065400200CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 232aa MW: 26303 Da PI: 9.1425 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.2 | 1.9e-15 | 136 | 219 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k +++s+v+ +l lp +f+ + g ++ t+tlede+g +++ ++ k++ l++GW++F+ +++L +gD +vF+ TRAES3BF065400200CFD_t1 136 FVKPMKQSHVTGGFWLGLPSHFCGLYlpG----SDDTITLEDEEGVEYKTRYLALKTG----LSAGWRRFALDHNLVDGDCLVFEW 213 89*********************888643....4569***************666666....***********************5 PP -.SSSEE CS B3 85 d.grsef 90 + + ++f TRAES3BF065400200CFD_t1 214 VvW-NTF 219 524.444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.7E-17 | 132 | 221 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-21 | 132 | 223 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-24 | 134 | 224 | No hit | No description |
SMART | SM01019 | 6.5E-18 | 136 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-13 | 136 | 222 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.433 | 136 | 227 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MAGALAYEEQ RRRQMEENDR KLEELGLHQL SAAVREAAGR KPSPVRLEAK SVKPKQVPRD 60 APVRQSSRVA SLPKQPKYRY EVLPPFGITC RTNGRGSSTR SDIINRVDAT DEARLHANSE 120 AQELLRKLVP GGNPSFVKPM KQSHVTGGFW LGLPSHFCGL YLPGSDDTIT LEDEEGVEYK 180 TRYLALKTGL SAGWRRFALD HNLVDGDCLV FEWVVWNTFY VRFLICYYAF RC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 1e-156 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020160679.1 | 2e-83 | B3 domain-containing protein Os06g0194400-like | ||||
Swissprot | Q69V36 | 1e-68 | Y6944_ORYSJ; B3 domain-containing protein Os06g0194400 | ||||
TrEMBL | A0A080YUW7 | 1e-172 | A0A080YUW7_WHEAT; Uncharacterized protein | ||||
STRING | EMT09213 | 1e-137 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1756 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 2e-46 | B3 family protein |
Publications ? help Back to Top | |||
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