PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF065400010CFD_t1 | ||||||||
Common Name | MYB56, TRAES_3BF065400010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 264aa MW: 29193.5 Da PI: 8.4764 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 45.7 | 1.5e-14 | 29 | 76 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed +l+ v+++G ++W+ a+ g++Rt+k+c++rw +yl TRAES3BF065400010CFD_t1 29 KGPWTEQEDMKLAWFVRLFGERRWDFLAKVSGLNRTGKSCRLRWVNYL 76 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 82 | 126 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+++eE+ l vd+++++G++ W++Ia+ m+ gRt++++k++w+++ TRAES3BF065400010CFD_t1 82 RGRMSPEEERLVVDLHARWGNR-WSRIAKAMP-GRTDNEIKNYWRTH 126 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.472 | 26 | 76 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.98E-29 | 27 | 123 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-12 | 28 | 78 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 29 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-19 | 30 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.15E-9 | 31 | 76 | No hit | No description |
PROSITE profile | PS51294 | 25.027 | 77 | 131 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-16 | 81 | 129 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.5E-16 | 82 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-23 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.23E-12 | 84 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MKTKQASKAK AAPSPGKEEE AVAPGGFRKG PWTEQEDMKL AWFVRLFGER RWDFLAKVSG 60 LNRTGKSCRL RWVNYLHPDL KRGRMSPEEE RLVVDLHARW GNRWSRIAKA MPGRTDNEIK 120 NYWRTHTRKL HKDTRAASAA SASTTTTTST SMSAASPATT SSSSSSSTND NDNHSHHGHG 180 DQETAASQEQ ADHQLLYTSG IGMDSHLLWN DALMDSYAWG AAAPSMIVPP PSSPVWDYCC 240 SDSLWGIGDD EVEYKKMLAV AGAP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-26 | 29 | 129 | 4 | 103 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 6e-26 | 29 | 129 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 6e-26 | 29 | 129 | 58 | 157 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-26 | 29 | 129 | 4 | 103 | C-Myb DNA-Binding Domain |
1msf_C | 2e-26 | 29 | 129 | 4 | 103 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX183617 | 0.0 | JX183617.1 Triticum aestivum MYB protein (MYB56) mRNA, MYB56-B allele, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185558.1 | 1e-159 | transcription factor MYB59-like | ||||
Swissprot | Q4JL76 | 6e-63 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A0A446QJQ1 | 0.0 | A0A446QJQ1_TRITD; Uncharacterized protein | ||||
TrEMBL | I6U7F1 | 0.0 | I6U7F1_WHEAT; MYB protein | ||||
STRING | TRIUR3_22432-P1 | 1e-165 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP636 | 37 | 169 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59780.3 | 4e-60 | myb domain protein 59 |
Publications ? help Back to Top | |||
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