PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF064700080CFD_t1 | ||||||||
Common Name | DREB6, TRAES_3BF064700080CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27883 Da PI: 7.9747 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.5 | 6.9e-18 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p + r r +lg+f ta eAa+a++ a+++++g TRAES3BF064700080CFD_t1 76 AYRGVRQRT-WGKWVAEIREP---N-RgNRLWLGSFPTAVEAARAYDDAARAMYG 125 59****999.**********8...2.359***********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 9.4E-12 | 75 | 125 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-35 | 76 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-20 | 76 | 133 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.799 | 76 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 77 | 134 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 77 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.13E-19 | 77 | 135 | No hit | No description |
PRINTS | PR00367 | 1.3E-9 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
METGGSKREG DCPGQERKKK VRRRSTGPDS VAETIKKWKE ENQKLLQENG SRKAPAKGSK 60 KGCMAGKGGP ENSNCAYRGV RQRTWGKWVA EIREPNRGNR LWLGSFPTAV EAARAYDDAA 120 RAMYGAKARV NFSEQSPDAS SGCTLAPPLL MSNGATAASH PSDGKDESES AGTVAHKVKK 180 EVSNDLRSTH EEHKTLEVSQ PKGKALHKEA NVSYDYFNVE EVLDMIIVEL SADVKMEAHE 240 EYQDGDDGFS LFSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 77 | 132 | 6 | 62 | ATERF1 |
3gcc_A | 2e-14 | 77 | 132 | 6 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY781361 | 0.0 | AY781361.1 Triticum aestivum DREB transcription factor 6 (DREB6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024314715.1 | 1e-149 | dehydration-responsive element-binding protein 2A isoform X4 | ||||
Swissprot | A2WL19 | 1e-124 | DRE2A_ORYSI; Dehydration-responsive element-binding protein 2A | ||||
TrEMBL | A0A446PF17 | 0.0 | A0A446PF17_TRITD; Uncharacterized protein | ||||
TrEMBL | Q2TN71 | 0.0 | Q2TN71_WHEAT; DREB transcription factor 6 | ||||
STRING | Traes_3AS_62742A0471.1 | 1e-158 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7315 | 35 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40340.1 | 2e-33 | ERF family protein |
Publications ? help Back to Top | |||
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