PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF063400070CFD_t1 | ||||||||
Common Name | TRAES_3BF063400070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 331aa MW: 36840.1 Da PI: 6.7054 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 60.7 | 4.8e-19 | 21 | 146 | 8 | 126 |
NAM 8 hPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknr..atksgyWk.a 85 hP ++el+ yL ++v++ ++++ ++i+e d+y ++P+dL + ++++++ wyfF+ + k g r+ r ++g W+ + TRAES3BF063400070CFD_t1 21 HPCEQELIAAYLGPRVTEGDMSC-KFIHEGDVYAAHPEDLTQqyaaaVASNGDEAWYFFTAVRAKG--GGRRGRtvDSQEGCWHsE 103 9**********************.89**************853566444447889****9998875..445555245679****45 PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmhey 126 g++ ev ++ +g l g ++ + f ++++ +++ W+m e TRAES3BF063400070CFD_t1 104 AGSKPEVSAHhhGGGLLGHRQNFSFVTKEDGVRVRSGWLMVEL 146 5666666665667888**********99999999******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 27.717 | 14 | 164 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.48E-28 | 20 | 164 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-11 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MVAYARRSRA PGRPHFALDA HPCEQELIAA YLGPRVTEGD MSCKFIHEGD VYAAHPEDLT 60 QQYAAAVASN GDEAWYFFTA VRAKGGGRRG RTVDSQEGCW HSEAGSKPEV SAHHHGGGLL 120 GHRQNFSFVT KEDGVRVRSG WLMVELGLHG DGQDEVTLCK VYFSPRAAKN NKKPAASSSA 180 RKRKADAGSP APARQCRRRR EMNQDDHPVE KQAVKAGKQE GFVEESSADE PEVVDPNDFF 240 WWVRNKEKLR LALGISEEDF YRPPSAAALE RSFGPDWPPA APPSSPVVPN EDKPVVMWLT 300 YEELHGLPEV REFLSPTKLL EEMRSSVKQH E |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 199 | KRKADAGSPAPARQCRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193093.1 | 0.0 | NAC domain-containing protein 92-like | ||||
TrEMBL | A0A077RSX2 | 0.0 | A0A077RSX2_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446PUM3 | 0.0 | A0A446PUM3_TRITD; Uncharacterized protein | ||||
STRING | TRIUR3_22118-P1 | 1e-169 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4011 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15170.1 | 8e-08 | NAC family protein |
Publications ? help Back to Top | |||
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