PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF062500050CFD_t1
Common NameTRAES_3BF062500050CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 503aa    MW: 54275.5 Da    PI: 6.2003
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF062500050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like781.2e-24204259156
                  G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRla 56 
                              k +++WtpeLH+rFv+aveqL G +kA+P++ilelm+ +  Lt+++++SHLQkYR++
  TRAES3BF062500050CFD_t1 204 KVKVDWTPELHRRFVQAVEQL-GLDKAVPSRILELMGNEyRLTRHNIASHLQKYRSH 259
                              5689*****************.**************88747**************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.428201261IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-24202262IPR009057Homeodomain-like
SuperFamilySSF466897.35E-16203262IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-24204259IPR006447Myb domain, plants
PfamPF002497.9E-9207257IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007165Biological Processsignal transduction
GO:0009658Biological Processchloroplast organization
GO:0009910Biological Processnegative regulation of flower development
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MLEVATLQSP NPAVFSLGEH HHVDVGFPEV TVEEDDFLLD YIDFSTCDMP FFHVDDGDDI  60
LPDLEVDPTE LLAEFADEPA TTTVLSPAAE PAPDGCETHH GGEAKTAAET ELPAEMGMEL  120
PEGKGETKGL LSSEEKDVRQ HNDNNKNNNN VGDEVCSAVT TDDSSAVVGS ENSKSSASAE  180
GHSKMTSKPA SAAAATKSSH GRRKVKVDWT PELHRRFVQA VEQLGLDKAV PSRILELMGN  240
EYRLTRHNIA SHLQKYRSHR KHLMAREAGA ARWTQKRQMY AAAGGPRKEA AAGGGPWVVP  300
TVGFPPPGTM AHAGMAHHPG QPPPFCRPLH VWGHPTGVDA PLPLSPPSML PVWPRHLAPP  360
PAWAHQPPMD PVYWHQQYNA ARKWGPQAVT QCVPPTMPPA PMMQRFAAPP MPGMMPHPMY  420
RPIPPPPSPV PQSNKVAGLQ LQLDAHPSKE SIDAAIGDVL VKPWLPLPLG LKPPSLDSVM  480
SELHKQGIPK VPPAATTNCD GAA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00022PBMTransfer from AT2G20570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3535710.0AK353571.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1001B16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187877.10.0probable transcription factor GLK2
SwissprotQ5NAN51e-125GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA0A077RRG80.0A0A077RRG8_WHEAT; Uncharacterized protein
STRINGTraes_3B_73B7FB5C1.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.18e-56GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]