PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF054400110CFD_t1
Common NameTRAES_3BF054400110CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 330aa    MW: 38381.3 Da    PI: 10.5297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF054400110CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-2027115198
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv+     + +  +v+p +f++++  +  +++t++l +++g +++v++  +k+ ++ vl +GWk F++a++L++gDf+vFk+dg
  TRAES3BF054400110CFD_t1  27 FFKVM--IGDFHE-KMVIPDRFVQHFRWQ--TGRTIKLASRHGYTFDVQI--TKNLEKLVLDSGWKAFARAHDLRTGDFLVFKYDG 105
                              56666..444544.59*******777666..5569***************..********************************99 PP

                              SSEE..EEEEE- CS
                       B3  87 rsefelvvkvfr 98 
                              +s+   +v +f 
  TRAES3BF054400110CFD_t1 106 HSQL--KVLIFG 115
                              7777..787775 PP
2B349.76.8e-162393241098
                              HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                       B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                              +++++ l +++k+ae +     ke+   +   +++g++Wev+++++k++++ +++ GWk+F++ n+L  gD ++F+l ++ ++  +
  TRAES3BF054400110CFD_t1 239 YGATRSLDISRKYAEVYlpF--KEQ---MLTLQRHGKKWEVRCRVKKNKNKRLMR-GWKHFARGNNLTLGDACLFELLRNkKKYVM 318
                              45566799******999532..223...555668*********998888886555.********************9998788888 PP

                              EEEEE- CS
                       B3  93 vvkvfr 98 
                              +v+++ 
  TRAES3BF054400110CFD_t1 319 NVHIIH 324
                              888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.43E-2321119IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-2421119IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.59224117IPR003340B3 DNA binding domain
CDDcd100172.21E-2125114No hitNo description
PfamPF023623.0E-1827114IPR003340B3 DNA binding domain
SMARTSM010191.5E-1127117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.84E-19222324IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-22222326IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.746230326IPR003340B3 DNA binding domain
CDDcd100172.08E-15232321No hitNo description
SMARTSM010195.8E-8233326IPR003340B3 DNA binding domain
PfamPF023621.3E-14238324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MSKPWKKRKE LDEHRYWNHP DEQDKHFFKV MIGDFHEKMV IPDRFVQHFR WQTGRTIKLA  60
SRHGYTFDVQ ITKNLEKLVL DSGWKAFARA HDLRTGDFLV FKYDGHSQLK VLIFGPSGCE  120
KIQACNLKKN AAPGKEWWGN TAGFVNTCHD LPMKFPHSGR QIRPSKDTSR QGNDIINVSS  180
SSSASDSAED DHSLPGCILA NGTLLNLNEV QKKQLKEKLR AINSEIPIYG CVIRKSSIYG  240
ATRSLDISRK YAEVYLPFKE QMLTLQRHGK KWEVRCRVKK NKNKRLMRGW KHFARGNNLT  300
LGDACLFELL RNKKKYVMNV HIIHKSLYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162977.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-104Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLA0A077S0E50.0A0A077S0E5_WHEAT; Uncharacterized protein
TrEMBLA0A446QD290.0A0A446QD29_TRITD; Uncharacterized protein
STRINGEMT199090.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-22B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]