PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF054400100CFD_t1 | ||||||||
Common Name | TRAES_3BF054400100CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 334aa MW: 38414.4 Da PI: 10.4617 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.3 | 5.1e-22 | 35 | 115 | 12 | 98 |
HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 + r+++p +fa+++ g+ ++t++l +++g +++v++ +k+ ++ vl +GWk F+ka++L++gDf+vFk+dg+s+ +v +f TRAES3BF054400100CFD_t1 35 FHERMIIPDRFAQHFRGQ--IGQTIKLASRHGYTFDVQI--TKNLEKLVLDSGWKAFAKAHNLRTGDFLVFKYDGHSQL--KVLIF 114 4568********888878..6779***************..********************************997777..78777 PP - CS B3 98 r 98 TRAES3BF054400100CFD_t1 115 G 115 5 PP | |||||||
2 | B3 | 53.9 | 3.3e-17 | 241 | 330 | 8 | 100 |
-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS B3 8 sdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 s ++k++ l +++k+ae + + e +++t + +g++Wev++++++++++ l +GW +Fv+ n+L+ gD+++F+l ++ ++ TRAES3BF054400100CFD_t1 241 SIYGKTRTLGISRKYAEVYlPFV--E-QMVT-LQHHGKKWEVRCCVKNRKSK-RLMRGWMHFVRGNNLQLGDVCLFELLRNkKKYV 321 556788899*******9996333..2.2455.556*********88544444.3667*********************99989999 PP .EEEEE-SS CS B3 92 lvvkvfrks 100 ++v+++rks TRAES3BF054400100CFD_t1 322 MNVHIIRKS 330 999999985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.7E-24 | 21 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-24 | 22 | 119 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.029 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.08E-22 | 25 | 114 | No hit | No description |
SMART | SM01019 | 1.1E-13 | 27 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-19 | 27 | 114 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-22 | 226 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.53E-21 | 226 | 330 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.971 | 234 | 330 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.12E-17 | 236 | 328 | No hit | No description |
SMART | SM01019 | 1.4E-12 | 237 | 330 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 239 | 329 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 334 aa Download sequence Send to blast |
MSKPWKKRKE LDEHRYWNHT EEQDKRFFKV MIGDFHERMI IPDRFAQHFR GQIGQTIKLA 60 SRHGYTFDVQ ITKNLEKLVL DSGWKAFAKA HNLRTGDFLV FKYDGHSQLK VLIFGPSGCE 120 KTCNLKKNAA PGKEWWGNTA GMVNTCHDLP MKFPHSGRKI KPSTDSSRQG NDIINVSSSS 180 SASDSAGGVS SSEDDHSLSS CILAKGTLLN LNHVQKKQLE EKIRAINSEI PIYGCVISKS 240 SIYGKTRTLG ISRKYAEVYL PFVEQMVTLQ HHGKKWEVRC CVKNRKSKRL MRGWMHFVRG 300 NNLQLGDVCL FELLRNKKKY VMNVHIIRKS LYKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162977.1 | 0.0 | putative B3 domain-containing protein Os03g0621600 | ||||
Swissprot | Q851V5 | 1e-102 | Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A077S7D4 | 0.0 | A0A077S7D4_WHEAT; Uncharacterized protein | ||||
STRING | EMT28380 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2901 | 29 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 1e-24 | B3 family protein |
Publications ? help Back to Top | |||
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