PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF053700010CFD_t1 | ||||||||
Common Name | TRAES_3BF053500190CFD_c1, TRAES_3BF053700010CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 24942.3 Da PI: 9.8596 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 103.1 | 3.6e-32 | 27 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknratksgyWka 85 lp GfrF+Ptdeel+ +yL++k+ + +l++ ++i+ +d+ +++PwdLp + + e yfF+ ++ +g + ra sg+W+a TRAES3BF053700010CFD_t1 27 LPIGFRFRPTDEELLLHYLRRKALSCPLPA-DIIPVADLARLHPWDLPGE---ADGERYFFHLPATGCWrKGGGTGRAGGSGVWRA 108 699***************************.99***************43...45678888877766542799************* PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +gk++ v++ g+ +g k+tLvf +p g +t W mheyrl TRAES3BF053700010CFD_t1 109 SGKERLVVAPrCGRPIGAKRTLVFC---RPGGARTGWAMHEYRL 149 *******99878999*********9...7999**********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-45 | 20 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.534 | 27 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.1E-20 | 28 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MALPAERRTE EAAVTGGCRV PAGQGGLPIG FRFRPTDEEL LLHYLRRKAL SCPLPADIIP 60 VADLARLHPW DLPGEADGER YFFHLPATGC WRKGGGTGRA GGSGVWRASG KERLVVAPRC 120 GRPIGAKRTL VFCRPGGART GWAMHEYRLL PAGLAAYATA KSLHAAKDWV VCRVFKKATP 180 ARRDTAGRRS RGDADMTPAS PSPASSCVTE SRSGMEEDDD ETASNSPRRE H |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-30 | 21 | 183 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-30 | 21 | 183 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-30 | 21 | 183 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-30 | 21 | 183 | 11 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swm_B | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swm_C | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swm_D | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swp_A | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swp_B | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swp_C | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
3swp_D | 3e-30 | 21 | 183 | 14 | 174 | NAC domain-containing protein 19 |
4dul_A | 3e-30 | 21 | 183 | 11 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-30 | 21 | 183 | 11 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184279.1 | 1e-145 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A077S6J8 | 1e-165 | A0A077S6J8_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446QB69 | 1e-165 | A0A446QB69_TRITD; Uncharacterized protein | ||||
STRING | Pavir.Eb03721.1.p | 2e-72 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8233 | 30 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 4e-37 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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