PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF053400010CFD_t1

Common Name

TRAES_3BF053400010CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 259aa MW: 27477 Da PI: 8.3506

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF053400010CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.9	2.3e-13	98	142	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W++eE+ l++ + ++lG+g+W+ I+r ++Rt+ q+ s+ qk+ TRAES3BF053400010CFD_t1 98 PWSEEEHRLFLVGLEKLGKGDWRGISRSYVTTRTPTQVASHAQKF 142 8******************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.403	91	147	IPR017930	Myb domain
SuperFamily	SSF46689	4.19E-17	92	148	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.4E-17	94	146	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	6.4E-10	95	138	IPR009057	Homeodomain-like
SMART	SM00717	8.5E-10	95	145	IPR001005	SANT/Myb domain
Pfam	PF00249	1.2E-10	98	141	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-9	98	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MLCEGGGGSS SGSGLRLFGV QVHVAAGRST GAGASMRKSY SMDCLQLAVA PSSIVSPSSS 60 SSSSVLLSID EGLERASNGY LSDGPHGRLV QERKKGVPWS EEEHRLFLVG LEKLGKGDWR 120 GISRSYVTTR TPTQVASHAQ KFFLRQSSMG KKKRRSSLFD MVPICENGIR VSEPLTNNSG 180 DASTSLPRYK SPDMASIDLN STQEDDMAMA GVPLLSASPR APFPAVLMEQ PPHGHGHGHH 240 CSPLDLELGM SLSPPSIGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	150	154	KKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:20130099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JF951923	0.0	JF951923.1 Aegilops speltoides clone TaMYB40 MYB-related protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020184061.1	0.0	transcription factor SRM1-like
Swissprot	Q7XC57	3e-39	MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBL	A0A077S0H9	0.0	A0A077S0H9_WHEAT; Uncharacterized protein
TrEMBL	A0A3B6FLK8	0.0	A0A3B6FLK8_WHEAT; Uncharacterized protein
TrEMBL	A0A446PSV1	0.0	A0A446PSV1_TRITD; Uncharacterized protein
STRING	Traes_3B_AE7851A5F.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4932	30	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-39	MYB_related family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Su CF, et al. A novel MYBS3-dependent pathway confers cold tolerance in rice. Plant Physiol., 2010. 153(1): p. 145-58 [PMID:20130099] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]