PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF043500070CFD_t1 | ||||||||
Common Name | TRAES_3BF043500070CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 228aa MW: 25282.6 Da PI: 8.4371 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.3e-19 | 84 | 138 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq+ Le +F++++++s+++++ LA++l+L rqV vWFqNrRa+ k TRAES3BF043500070CFD_t1 84 RKKLRLTKEQTALLEGHFKEQSTLSHKQKASLARQLSLRPRQVEVWFQNRRARTK 138 78889************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 119.1 | 2.4e-38 | 84 | 172 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+keq +lLE +F+e+++L++++K++lar+L l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++ TRAES3BF043500070CFD_t1 84 RKKLRLTKEQTALLEGHFKEQSTLSHKQKASLARQLSLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQH 169 69************************************************************************************ PP HD-ZIP_I/II 87 Lree 90 Lr + TRAES3BF043500070CFD_t1 170 LR-A 172 *9.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 68 | 138 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.13E-19 | 69 | 141 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 80 | 140 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.6E-16 | 82 | 144 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.8E-16 | 84 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.72E-15 | 84 | 141 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 115 | 138 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.5E-10 | 140 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 1.6E-20 | 140 | 183 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MFMAQEEAGL ALGLSLGLGA GHHHHHLLQQ KEAAPLEPCL SLSLAGAGAV KREEEEDEER 60 ALIYCSSAAD DHIEGYNSSS GGSRKKLRLT KEQTALLEGH FKEQSTLSHK QKASLARQLS 120 LRPRQVEVWF QNRRARTKLK QTEVDCELLK RCCETLTEEN RRLHRELQHL RALHHHQHHH 180 HHPAAAFFIP SAATVASVCP SCPGAPPAHA ADRPATKRSF FATKSAAC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 88 | SRKKLRL |
2 | 132 | 140 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188208.1 | 1e-112 | homeobox-leucine zipper protein HOX15-like | ||||
Swissprot | A2Z4C4 | 1e-55 | HOX15_ORYSI; Homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 1e-55 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | W5CP51 | 1e-163 | W5CP51_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_00712301E.1 | 1e-164 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 3e-42 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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