PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRAES3BF029000080CFD_t1

Common Name

TAA_ctg0005b.00040.1, TRAES_3BF029000080CFD_c1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

WRKY

Protein Properties

Length: 288aa MW: 31478.7 Da PI: 4.7195

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRAES3BF029000080CFD_t1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.1e-30	80	137	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+v+ +tY+ +Hnh+ TRAES3BF029000080CFD_t1 80 DSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRADPTVLLVTYSYDHNHP 137 99**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.3E-31	70	139	IPR003657	WRKY domain
SuperFamily	SSF118290	8.76E-26	76	139	IPR003657	WRKY domain
SMART	SM00774	4.6E-35	78	138	IPR003657	WRKY domain
Pfam	PF03106	2.0E-25	80	137	IPR003657	WRKY domain
PROSITE profile	PS50811	31.433	80	139	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MSDCSTGTDS PRADSVDEQP PADAESPGGG QSKRDHPSPS SPLPPPKRSR RSVEKRVVSV 60 PISECGERAK TNGEGPPPPD SWAWRKYGQK PIKGSPYPRG YYRCSSSKGC PARKQVERSR 120 ADPTVLLVTY SYDHNHPWPA PKSGCQPNKS SPRLVDPKPE PGTPVECQPE HGPEAPEHGP 180 EAPEQDQEEE HEQKPVIGLA DPAAITTVTA AAEEEEESFD FGWFDQYPTW HRTALYVPAF 240 DVAPPPEDWE RELQGEDALF AGLGELPECA IVFGRRRELA LAATAPCS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	6e-19	55	140	6	80	Disease resistance protein RRS1
5w3x_D	6e-19	55	140	6	80	Disease resistance protein RRS1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FN564426	0.0	FN564426.1 Triticum aestivum chromosome 3B-specific BAC library, contig ctg0005b.
GenBank	HG670306	0.0	HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020185102.1	1e-162	probable WRKY transcription factor 65
TrEMBL	D8L9F7	0.0	D8L9F7_WHEAT; WRKY transcription factor, putative, expressed
STRING	Traes_3B_73F22ECC6.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7088	36	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	5e-38	WRKY DNA-binding protein 65

Publications ? help Back to Top
Breen J, et al. Wheat beta-expansin (EXPB11) genes: Identification of the expressed gene on chromosome 3BS carrying a pollen allergen domain. BMC Plant Biol., 2010. 10: p. 99 [PMID:20507562] Choulet F, et al. Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces. Plant Cell, 2010. 22(6): p. 1686-701 [PMID:20581307] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]