PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF026400090CFD_t1
Common NameTRAES_3BF026400090CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 222aa    MW: 24704.1 Da    PI: 9.803
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF026400090CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.1e-1979132356
                              --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              k+ +++keq + Lee F+ n+++s +++e LA kl+L  rqV vWFqNrRa+ k
  TRAES3BF026400090CFD_t1  79 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTK 132
                              67789***********************************************98 PP
2HD-ZIP_I/II119.61.6e-3879166289
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+rlskeq++lLEesF+ +++L+p++K++la +L+l+prqv+vWFqnrRARtk+k++E+++e+Lkr++ +l+een+rL++eveeL
  TRAES3BF026400090CFD_t1  79 KKLRLSKEQSRLLEESFRLNHTLSPKQKEALAIKLKLRPRQVEVWFQNRRARTKLKHTEMECEYLKRCFGSLTEENRRLQREVEEL 164
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 re 89 
                              r+
  TRAES3BF026400090CFD_t1 165 RA 166
                              94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.9E-1853135IPR009057Homeodomain-like
SuperFamilySSF466895.99E-1967134IPR009057Homeodomain-like
PROSITE profilePS5007116.8674134IPR001356Homeobox domain
SMARTSM003896.6E-1676138IPR001356Homeobox domain
CDDcd000864.27E-1577135No hitNo description
PfamPF000464.4E-1679132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
SMARTSM003405.5E-21134177IPR003106Leucine zipper, homeobox-associated
PfamPF021835.2E-9134167IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGATSPSGLE LTMAVPGLSS SSGSEGFVCN NNISNNGGGN MRGLDMNQPA SGGEEEDFLM  60
GGVEEDEEER GAGGPHRPKK LRLSKEQSRL LEESFRLNHT LSPKQKEALA IKLKLRPRQV  120
EVWFQNRRAR TKLKHTEMEC EYLKRCFGSL TEENRRLQRE VEELRAMRMA PPTVLSPHTR  180
QPLPASALTM CPRCERVTAA TGPRITRPPA SPFHPRRPSA AF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription repressor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457270.0AF145727.1 Oryza sativa homeodomain leucine zipper protein (Oshox3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154762.11e-140homeobox-leucine zipper protein HOX3
SwissprotQ0JKX11e-125HOX3_ORYSJ; Homeobox-leucine zipper protein HOX3
SwissprotQ9XH381e-125HOX3_ORYSI; Homeobox-leucine zipper protein HOX3
TrEMBLW5CTY71e-160W5CTY7_WHEAT; Uncharacterized protein
STRINGTraes_3B_436FBF290.11e-160(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP68263549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01430.14e-64homeobox-leucine zipper protein 17
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]