PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF026200160CFD_t1
Common NameTRAES_3BF026200160CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ZF-HD
Protein Properties Length: 232aa    MW: 25468.2 Da    PI: 8.3193
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF026200160CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.43.1e-274192358
              ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58
                             + +Y+eCl+NhAa+ Ggh++DGC+Efmp+    +  + l CaACgCHR+FHRr+++
  TRAES3BF026200160CFD_t1 41 RRQYHECLRNHAAAAGGHVLDGCCEFMPA----SPEDPLACAACGCHRSFHRRDPS 92
                             568*************************9....4458****************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257746.0E-192490IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015669.6E-234390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.7E-234390IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.7824490IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.4E-26141213IPR009057Homeodomain-like
SuperFamilySSF466899.1E-17143211IPR009057Homeodomain-like
TIGRFAMsTIGR015651.8E-23154211IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEFQGEEDGD GSDVGDGAPP AAPHRSATAN GPADNMQAEA RRQYHECLRN HAAAAGGHVL  60
DGCCEFMPAS PEDPLACAAC GCHRSFHRRD PSPGRAHLPL LAASARAPLL LPPAASKHPH  120
QRLPFPYGLA ASGGTGTTTE SSSEERRGPS PAPRKRSRTT FTREQKEQML EFAERVGWRL  180
QRQDEAMVGH FCAQAGVRRQ ALKVWMHNNK QSSSGRRQQQ EKQLQEHRQE QQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-231552151880ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020172063.11e-147zinc-finger homeodomain protein 5-like
SwissprotA2WSZ61e-67ZHD5_ORYSI; Zinc-finger homeodomain protein 5
SwissprotQ5VM821e-67ZHD5_ORYSJ; Zinc-finger homeodomain protein 5
TrEMBLA0A077RY201e-169A0A077RY20_WHEAT; Uncharacterized protein
STRINGBRADI2G44540.12e-74(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.19e-35zinc finger homeodomain 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]