PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF026200120CFD_t1 | ||||||||
Common Name | TRAES_3BF026200120CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 213aa MW: 23922.6 Da PI: 6.9615 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.5 | 5.5e-17 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++lv ++ q+G g+W+ ar g++R +k+c++rw++yl TRAES3BF026200120CFD_t1 16 KGPWTLEEDLILVGYISQHGEGSWDNLARSAGLNRNGKSCRLRWLNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 69 | 112 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eEd + +++ +lG++ W+ Ia++++ gRt++++k++w++ TRAES3BF026200120CFD_t1 69 RGSISPEEDMVIRELHSRLGNK-WAEIAKHLP-GRTDNEVKNYWRT 112 7888******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.13 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 9.36E-31 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.7E-13 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.9E-15 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.55E-10 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 24.782 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 8.6E-15 | 68 | 116 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 69 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-24 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.04E-11 | 73 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MARMMCGRAG EPAVRKGPWT LEEDLILVGY ISQHGEGSWD NLARSAGLNR NGKSCRLRWL 60 NYLRPGLRRG SISPEEDMVI RELHSRLGNK WAEIAKHLPG RTDNEVKNYW RTRVHKKAPH 120 QNQFPAQPAS EATTSVSASA STSHASSTVG DEYTQTSFPY PELSWVATDH HETVDVGAPT 180 ARFFPSEFGG NFWNVPDNFW ETLPLSDPVY EAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 12 | 118 | 23 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020161957.1 | 1e-132 | myb-related protein 340-like | ||||
TrEMBL | W5CZM0 | 1e-158 | W5CZM0_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_90A30CBB4.1 | 1e-159 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13240 | 26 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27810.1 | 2e-56 | myb domain protein 21 |
Publications ? help Back to Top | |||
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