PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021600300CFD_t1
Common NameTRAES_3BF021600300CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 448aa    MW: 50358.4 Da    PI: 5.0893
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021600300CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.2e-2151292126
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratk. 79 
                              ppGfrF Pt eel+ +yL++ v++       el  ++  +diy  +P  L +   ++ +++ +wyf + ++ k a g r++ra++ 
  TRAES3BF021600300CFD_t1   5 PPGFRFTPTREELIGYYLNPWVADPGktpvAELRGIVCVADIYGEDPAALTSrhrRFGHDDGNWYFLCVARWKGAVGGRASRAVRg 90 
                              9*********************987765544443345555**********843445556777********************6664 PP

                      NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                               g+W+  gk  +v +      g ++ + +    + +g+kt W+m+e 
  TRAES3BF021600300CFD_t1  91 GGTWHGYGKRVAVAE-----AGHRQAFEYL---DARGRKTAWLMEEI 129
                              899******888877.....899******9...678899*****995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-223147IPR003441NAC domain
PROSITE profilePS5100524.0624151IPR003441NAC domain
PfamPF023657.3E-155128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MNHAPPGFRF TPTREELIGY YLNPWVADPG KTPVAELRGI VCVADIYGED PAALTSRHRR  60
FGHDDGNWYF LCVARWKGAV GGRASRAVRG GGTWHGYGKR VAVAEAGHRQ AFEYLDARGR  120
KTAWLMEEIG TVLPVATGAN GVRVLCRERG ESSKASRSSK RRRRQELKPL GMVAMEKKPE  180
PLEHVFAKDE PESWEILAME DEAEPWEMIT MEDELEQWET KTYCEKPSPL QMLTNNLTWP  240
QEILTNKLPW PLEMLTNNLP WPLEMLTNNL TLPSEMLSKN FPLPLEMLTN NLVSPLQTLN  300
KNLPEPAETA TKNLPSPLEI LTKNLPKPLE ILTKEEPTTT TTAFDQDSGT ANKEATPNAE  360
MEMQADAEWH SHYPELFEQK EAPPMEDVMK PLPAPTVQEF EQGAALPAAA VEEFGGVAWS  420
WGGHGRRCLV RPISLAWILP GFSHGYLF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.12e-65NAC domain-containing protein 30-like
TrEMBLA0A077RX810.0A0A077RX81_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.11e-09vascular related NAC-domain protein 7
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]