PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021600290CFD_t1
Common NameTRAES_3BF021600290CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 400aa    MW: 44679.4 Da    PI: 4.5197
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021600290CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.21e-168112297
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk..leleev.ikev.diykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknr.at 78 
                              ppGfrF Pt+eel+ +yL + v++     + e+  i  v d+y  +P  L +   ++ +++ +wyf + ++ k ++ g r++r + 
  TRAES3BF021600290CFD_t1   8 PPGFRFTPTQEELILYYLDPWVADPGktPDGERLgIVCVaDVYGEDPAALTSrhwRFGHDDGNWYFLCVARWKGNRaGGRASRtVQ 93 
                              9*********************987654344344455555**********843556666777******98877664499****556 PP

                      NAM  79 ksgyWkatgkdkevlskkg 97 
                                g+W+ +gk  +v  +++
  TRAES3BF021600290CFD_t1  94 GGGTWHGSGKRVAVAGAGH 112
                              6999******999987543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.75E-194114IPR003441NAC domain
PROSITE profilePS5100520.1557172IPR003441NAC domain
PfamPF023651.4E-108105IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MAGMDHAPPG FRFTPTQEEL ILYYLDPWVA DPGKTPDGER LGIVCVADVY GEDPAALTSR  60
HWRFGHDDGN WYFLCVARWK GNRAGGRASR TVQGGGTWHG SGKRVAVAGA GHRVHQTTRT  120
AEDEERGESS KAARSSKRRR RGEHDIATRA IKPLEMFAME DKPEALEQVF AKDEPESWEI  180
LAMEDEPEPW EMITLEDELE PWEMITMDKP SPLQMLTNNM TCPQEMLTNN LPWPLEMLSK  240
NFPLPLEMLT NNLASPLETL SKNLPEPAET VTKNLPSPLE ILGKNLPKLD ILTKEEPTTT  300
TTAFDQDSGA ANKEATPNAE MEMPADAEWH LHYPELFEQQ EPPPMEDVMK PLPAPTVQEF  360
EQGASPATVQ ELGAAAWGWG GHGRRCLVRP ISLAWILPGF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A077S2M50.0A0A077S2M5_WHEAT; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-09NAC-domain protein 101
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]