PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF021600260CFD_t1
Common NameTRAES_3BF021600260CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 194aa    MW: 21217.8 Da    PI: 7.1122
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF021600260CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.81.1e-1581322125
                      NAM   2 ppGfrFhPtdeelvveyLkkkvegkk...leleevikev.diykvePwdLpk...kvkaeekewyfFskrdkkyat.gkrknratk 79 
                              ppGfrF Pt eel+ +yL + v++     + + + i  v  +y  +P  L +   ++ +++ +wyf + ++ k ++ g r++ra++
  TRAES3BF021600260CFD_t1   8 PPGFRFTPTREELIRYYLDPWVADPGktpVGELQGIVCVaYVYGEDPAALTSwhrRFGHDDGNWYFLCVARWKGNRpGGRASRAVR 93 
                              8*********************9877655333344555548999******843446666778******99988775599****999 PP

                      NAM  80 sgy.WkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmhe 125
                               g  W+  gk  +v++   +  g ++ + +    + +g+kt  +m+e
  TRAES3BF021600260CFD_t1  94 GGDtWHGYGK--RVTA---AGAGHRQAFEYL---DARGRKTACLMEE 132
                              7744**9998..5555...347999999999...5667778888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-176154IPR003441NAC domain
PROSITE profilePS5100518.577155IPR003441NAC domain
PfamPF023654.0E-128132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MEGMDHEPPG FRFTPTREEL IRYYLDPWVA DPGKTPVGEL QGIVCVAYVY GEDPAALTSW  60
HRRFGHDDGN WYFLCVARWK GNRPGGRASR AVRGGDTWHG YGKRVTAAGA GHRQAFEYLD  120
ARGRKTACLM EELGTVLPAA TDDAGVRVLC RVHQTARTAA DGDEEGAGSP AWPLGLLRGG  180
AAESTTLPQM QRMS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826981.12e-68NAC domain-containing protein 30-like
TrEMBLA0A077S6F31e-140A0A077S6F3_WHEAT; Uncharacterized protein
STRINGPavir.Ha01862.1.p6e-63(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.17e-10NAC domain containing protein 53
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]