PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRAES3BF020500020CFD_t1 | ||||||||
Common Name | TRAES_3BF020500020CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | B3 | ||||||||
Protein Properties | Length: 480aa MW: 53431.2 Da PI: 5.9202 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 33 | 1.1e-10 | 130 | 199 | 1 | 76 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 f+k +++s+v +l lp +f+++h k +++ ++lede+g ++ k+ + +++ l++GW++F+ +++k+ TRAES3BF020500020CFD_t1 130 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKV 199 899********************999533..5679***************..888877..9********9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-11 | 124 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-15 | 125 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-16 | 128 | 199 | No hit | No description |
Pfam | PF02362 | 7.4E-9 | 130 | 199 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-5 | 130 | 213 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MVMEQKMALV HRRLALLDRE SDKEADVAPT ATMVRSFSLS STQIVGHCRF WLVGFQKKRG 60 RLVNTKNDME QKLNMSTPGL ALVESGGSNS SKSDVDDDLV PMVRTVGNFG SAMERAEEVL 120 VKLPAEHPSF VKHMLHSHVV HGFWLGLPSD FCNKHLPKKD TAIVLEDEDG HNYDAKYLGA 180 KQGLSAGWRG FAINHDIKVY ILRANNYTTT DGAIGLLCLE AGKEKIPKEE SSNDVKSDAG 240 KEKIPKEESS NDVKSEAGKE KIPKEESSND VKSEKKPKVA WSDSSNLASE SITDGIKFSD 300 TAIDFDDVND FSSFSIVYDG LVIDCEFPDH LRKTYYELCC AQKSFLHKEL LKGLNLTLVV 360 GAIMETIDIA EGIRACKARA PSCKHFVVWK KNLQALKLLG MNVDFLLKRV DDLLSLPAPP 420 RVPAEVKLER AHTVAKIKEV ESRISSVKDT LEEIDMEMEE MESSAKMVDE MMQLLATAPW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189684.1 | 0.0 | B3 domain-containing protein Os01g0234100-like | ||||
Swissprot | Q0JP99 | 1e-143 | Y1341_ORYSJ; B3 domain-containing protein Os01g0234100 | ||||
TrEMBL | A0A077RRL7 | 0.0 | A0A077RRL7_WHEAT; Uncharacterized protein | ||||
STRING | EMT26046 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6080 | 23 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G19184.1 | 3e-28 | B3 family protein |
Publications ? help Back to Top | |||
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