PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF020500010CFD_t1
Common NameTRAES_3BF020500010CFD_c1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 480aa    MW: 53447.2 Da    PI: 5.9202
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF020500010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3331.1e-10130199176
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                              f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +++k+
  TRAES3BF020500010CFD_t1 130 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAIVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKV 199
                              899********************999533..5679***************..888877..9********9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-11124199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-15125199IPR015300DNA-binding pseudobarrel domain
CDDcd100171.43E-16128199No hitNo description
PfamPF023627.4E-9130199IPR003340B3 DNA binding domain
SMARTSM010191.9E-5130213IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MVMEQKMALV HRRLALLDRE SDKEADVAPT ATMVRSFSLS STQIVGHCRF WLVGFQKKRG  60
RLVNTKNDME QKLNMSTPGL ALVESGGSNS SKSDVDDDLV PMVRTVGNFG SAMERAEEVL  120
VKLPAEHPSF VKHMLHSHVV HGFWLGLPSD FCNKHLPKKD TAIVLEDEDG HNYDAKYLGA  180
KQGLSAGWRG FAINHDIKVY ILRANNYTTT DGAIGLLCLE AGKEKIPKEE SSNDVKSDAG  240
KEKIPKEESS NDVKSEAGKE KILKEESSND VKSEKKPKVA WSDSSNLASE SITDGIKFSD  300
TAIDFDDVND FSSFSIVYDG LVIDCEFPDH LRKTYYELCC AQKSFLHKEL LKGLNLTLVV  360
GAIMETIDIA EGIRACKARA PSCKHFVVWK KNLQALKLLG MNVDFLLKRV DDLLSLPAPP  420
RVPAEVKLER AHTVAKIKEV ESRISSVKDT LEEIDMEMEE MESSAKMVDE MMQLLATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189684.10.0B3 domain-containing protein Os01g0234100-like
SwissprotQ0JP991e-142Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A077RVL30.0A0A077RVL3_WHEAT; Uncharacterized protein
TrEMBLA0A446PLZ20.0A0A446PLZ2_TRITD; Uncharacterized protein
STRINGEMT260460.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-28B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]