PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF018800030CFD_t1 | ||||||||
Common Name | TRAES_3BF018800030CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 292aa MW: 32026.9 Da PI: 6.7218 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.8 | 4.5e-07 | 33 | 78 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT eE + + +a + + +W+ +a +++ ++t +++++++ TRAES3BF018800030CFD_t1 33 GAWTLEENKVFEEALAAIDLDapdRWEMVALMLP-RKTVADVVNHYR 78 79*****************99*************.***********8 PP | |||||||
2 | Myb_DNA-binding | 46.4 | 9.1e-15 | 140 | 184 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++++ k++G g+W+ I+r + Rt+ q+ s+ qky TRAES3BF018800030CFD_t1 140 PWTEEEHRLFLKGLKKYGRGDWRNISRNYVTSRTPTQVASHAQKY 184 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.284 | 27 | 81 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.2E-6 | 31 | 83 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 8.61E-10 | 33 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.56E-5 | 34 | 80 | No hit | No description |
PROSITE profile | PS51294 | 20.286 | 133 | 189 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.15E-17 | 135 | 189 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-18 | 136 | 187 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.9E-12 | 137 | 183 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.9E-13 | 137 | 187 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-12 | 140 | 184 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.56E-12 | 140 | 185 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 292 aa Download sequence Send to blast |
MMAEAWVDVL PPPAPYFAGQ PCWAVQQERR GGGAWTLEEN KVFEEALAAI DLDAPDRWEM 60 VALMLPRKTV ADVVNHYRAL ENDVGFIEAG LVPFPHYDSS SPSSGFTLDW DGGAAGAGGF 120 RRGYCLKRGR ADQERKKGVP WTEEEHRLFL KGLKKYGRGD WRNISRNYVT SRTPTQVASH 180 AQKYFIRLTS GGKDNKRRSS IHDITTVNVP DDDDRGSPSG SPPSALTTVD TKPSPSYGGQ 240 RHAFMPPTLP AGTLGGGHPY GNVKLEHQSS FMDGAGLDLD DSLLLQIQCG QL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-14 | 29 | 100 | 5 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00296 | DAP | Transfer from AT2G38090 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF951924 | 0.0 | JF951924.1 Aegilops speltoides clone TaMYB41 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182102.1 | 0.0 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 4e-74 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A446Q5K5 | 0.0 | A0A446Q5K5_TRITD; Uncharacterized protein | ||||
TrEMBL | W5CQR3 | 0.0 | W5CQR3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_3B_1787A8428.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2274 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58900.1 | 8e-75 | Homeodomain-like transcriptional regulator |
Publications ? help Back to Top | |||
---|---|---|---|
|