PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF005100010CFD_t1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family WRKY
Protein Properties Length: 272aa    MW: 29244.8 Da    PI: 7.4715
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF005100010CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.14.7e-25104162258
                              --SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS CS
                     WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnh 58 
                               Dg+ WrKYGqK+++gs++pr YYrC+++  gC ++++v+rs+e+p +++i Y geH++
  TRAES3BF005100010CFD_t1 104 ADGFLWRKYGQKDINGSNHPRLYYRCAFRgeGCAATRRVQRSQEEPAAFVIAYYGEHTC 162
                              6***************************9999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.8E-2693163IPR003657WRKY domain
PROSITE profilePS5081121.78198165IPR003657WRKY domain
SuperFamilySSF1182901.7E-2398163IPR003657WRKY domain
SMARTSM007742.6E-32103164IPR003657WRKY domain
PfamPF031068.5E-24105162IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MALATPTAVV LQLMTMGQQS AAHLGELLRA ASPPVRAEHQ ALATEILRCC DRVIATVSAG  60
ATDKKRKMTD PGATFCHLPA AAMPSKRRVR AAEAHREVQT DTTADGFLWR KYGQKDINGS  120
NHPRLYYRCA FRGEGCAATR RVQRSQEEPA AFVIAYYGEH TCGAGFGDAC QQGAAPVPPT  180
VVDSGSNARG AVGDVDWNRG SLLLPSLPAE HGARRRGEAP SDTSRRLLSP SSSSYSSEVE  240
LGASPVGEFL DGSFDWEWET VVNSLRFGDL LQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-161051621068OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186002.11e-176probable WRKY transcription factor 46
TrEMBLA0A3B6FSM10.0A0A3B6FSM1_WHEAT; Uncharacterized protein
STRINGEMT202011e-175(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83223147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-18WRKY DNA-binding protein 46
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]