PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRAES3BF003300050CFD_t1 | ||||||||
Common Name | TRAES_3BF003300050CFD_c1, TRAES_3BF006500040CFD_c1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 273aa MW: 29319.8 Da PI: 6.619 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42 | 1.6e-13 | 11 | 102 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 ffk+l+p + + l+lp kfa++ + ++ tl+d++grsW v l + g + ++GW++Fv gL +g +vF + g TRAES3BF003300050CFD_t1 11 FFKILLPGSFE--SSLSLPPKFAARLDRPPVL-AVATLRDPTGRSWHVGLVRHGAAGLRFDGRGWRSFVAGCGLSAGQLLVFDHLG 93 78888554444..449**********988877.59***************4333333356679********************998 PP SSEE..EEEEE CS B3 87 rsefelvvkvf 97 + +f v f TRAES3BF003300050CFD_t1 94 DLDF--AVEPF 102 8666..66555 PP | |||||||
2 | B3 | 44.8 | 2.2e-14 | 194 | 264 | 15 | 87 |
-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 + l k+f+++ g + ++ +l++ + r+Wev + r +s++ ++ +GW++F+ +ngL+ D++vF+ ++ TRAES3BF003300050CFD_t1 194 YMELTKTFCARVGWAESCTAELSVAGRGDRRWEVSV--RVGSKGGMIMAGWEGFAWDNGLRISDVCVFRPADT 264 57799*******99999*******************..88888888899*******************96544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.152 | 9 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-16 | 9 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.05E-16 | 11 | 103 | No hit | No description |
SuperFamily | SSF101936 | 1.06E-15 | 11 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.6E-10 | 11 | 97 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.3E-10 | 11 | 105 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.12 | 186 | 272 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.35E-11 | 192 | 266 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-13 | 193 | 270 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.6E-10 | 193 | 267 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 7.49E-7 | 195 | 260 | No hit | No description |
PROSITE profile | PS50863 | 9.798 | 214 | 273 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 273 aa Download sequence Send to blast |
MEGDAVLRQK FFKILLPGSF ESSLSLPPKF AARLDRPPVL AVATLRDPTG RSWHVGLVRH 60 GAAGLRFDGR GWRSFVAGCG LSAGQLLVFD HLGDLDFAVE PFDTSGCSSY FDGERGSTTN 120 IDDDDAAPDV EESGSDNHHH GRSPSRSSLP ATTGTKRRKK LSPANASPAG SCGQSSSDDG 180 ALRLGIEQPF HLQYMELTKT FCARVGWAES CTAELSVAGR GDRRWEVSVR VGSKGGMIMA 240 GWEGFAWDNG LRISDVCVFR PADTGDQVVQ AKC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171936.1 | 1e-160 | B3 domain-containing protein Os03g0212300-like | ||||
TrEMBL | A0A077RES4 | 0.0 | A0A077RES4_WHEAT; Uncharacterized protein | ||||
STRING | BRADI4G00380.1 | 1e-77 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16802 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 7e-16 | B3 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|