PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRAES3BF000900050CFD_t1
Common NameTRAES_3BF000900050CFD_c1, ZFN1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 435aa    MW: 47373.5 Da    PI: 8.5752
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRAES3BF000900050CFD_t1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-1074100127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++ C +++rtG C++G +C+F+H++
  TRAES3BF000900050CFD_t1  74 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 100
                              5789*********************97 PP
2zf-CCCH38.12.6e-12121145327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C+++++tGtCk+G++CkF+H++
  TRAES3BF000900050CFD_t1 121 QPECQYYLKTGTCKFGPTCKFHHPR 145
                              799********************96 PP
3zf-CCCH38.22.4e-12167191327
                              S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                              +++C ++++tG+CkyG++CkF+H++
  TRAES3BF000900050CFD_t1 167 ERECAYYLKTGQCKYGNTCKFNHPE 191
                              799********************96 PP
4zf-CCCH34.63.2e-11328353227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              ++++C ++ +tG Ck+G+ CkF+H++
  TRAES3BF000900050CFD_t1 328 DQPECIYYIKTGDCKFGAVCKFHHPR 353
                              689*********************96 PP
5zf-CCCH41.62e-13373399127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              +++elC+f++r+G+Ck+G +CkF H++
  TRAES3BF000900050CFD_t1 373 PGEELCKFYSRYGICKFGVNCKFDHPM 399
                              689**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.70973101IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-573100IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-875100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-578102IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-479100IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.694118146IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-6118145IPR000571Zinc finger, CCCH-type
PfamPF006429.2E-10121145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-5124146IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568164192IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6164190IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5164191IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10167191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5170190IPR000571Zinc finger, CCCH-type
SMARTSM003560.0071326353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.019326354IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-7328353IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-5329353IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971372400IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-7372399IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-10374399IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6374399IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5376397IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDEAGRASAP AVVTVTASAA APSPPPPPPP ATATAAAADP PSPDPDALYE EGMWQQMAMS  60
SGATMQSGPY PVRPGEPDCT YYLRTGLCRF GMSCRFNHPQ DRNTAIASAR MKGEYPERVG  120
QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRPNEREC AYYLKTGQCK  180
YGNTCKFNHP EIFSAVASSR GSPIYPPVHN SGSTGPHSYT GTMASWTYPR GSFIPSPRWQ  240
SPSNYTPMIV PQGLVQVPNW NSYPGQMVPV SSPESRLQSP GAQQYYGTSR QGEASAGNQG  300
MQSPYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH HPRVRSQPPP  360
DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY SASASPNAPM  420
ARRLLESPSG SAYAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3679460.0AK367946.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2065F23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020151757.10.0zinc finger CCCH domain-containing protein 12-like
SwissprotQ5JLB50.0C3H12_ORYSJ; Zinc finger CCCH domain-containing protein 12
TrEMBLA0A446QA690.0A0A446QA69_TRITD; Uncharacterized protein
TrEMBLD7NXU00.0D7NXU0_WHEAT; Zinc finger protein
STRINGTraes_3B_6BDE5B957.20.0(Triticum aestivum)
STRINGTRIUR3_13576-P10.0(Triticum urartu)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-145zinc finger protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Breen J, et al.
    A highly conserved gene island of three genes on chromosome 3B of hexaploid wheat: diverse gene function and genomic structure maintained in a tightly linked block.
    BMC Plant Biol., 2010. 10: p. 98
    [PMID:20507561]
  3. Deng H,Liu H,Li X,Xiao J,Wang S
    A CCCH-type zinc finger nucleic acid-binding protein quantitatively confers resistance against rice bacterial blight disease.
    Plant Physiol., 2012. 158(2): p. 876-89
    [PMID:22158700]
  4. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]