PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sevir.9G518400.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 227aa MW: 25384.8 Da PI: 8.6902 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.9 | 1.7e-25 | 12 | 61 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s Sevir.9G518400.2.p 12 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFNFAS 61 89*********************************************986 PP | |||||||
2 | K-box | 42.8 | 2.3e-15 | 88 | 174 | 13 | 99 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 ++ + +L++e+ + ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ + K++ +l++i+ l +k +l een +L+++++ Sevir.9G518400.2.p 88 QSHVNDSTCVRLREELAEASLKLRQMRGEELQRLSVQQLQELEKTLESGLGSVLKIKSQKILDEINGLERKRMQLIEENSRLKEQVA 174 22333445669999999999***************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.7E-33 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.179 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.14E-29 | 5 | 87 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.29E-36 | 5 | 76 | No hit | No description |
Pfam | PF00319 | 3.2E-24 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.1E-24 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.876 | 89 | 179 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 1.4E-13 | 93 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MAGKRERIAI RRIDNLAARQ VTFSKRRRGL FKKAEELSIL CDAEVGLVVF SATGKLFNFA 60 SSSMKQIIDR YDSHSKTLQK SEASSKLQSH VNDSTCVRLR EELAEASLKL RQMRGEELQR 120 LSVQQLQELE KTLESGLGSV LKIKSQKILD EINGLERKRM QLIEENSRLK EQVARMEMQL 180 GADSEVVYEE GQSSESVTNT SYPPADTDDG GSDTSLRLGL PLFSSK* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 5 | 75 | 3 | 73 | MEF2C |
5f28_B | 3e-18 | 5 | 75 | 3 | 73 | MEF2C |
5f28_C | 3e-18 | 5 | 75 | 3 | 73 | MEF2C |
5f28_D | 3e-18 | 5 | 75 | 3 | 73 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sevir.9G518400.2.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT036048 | 0.0 | BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds. | |||
GenBank | BT087324 | 0.0 | BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds. | |||
GenBank | BT087852 | 0.0 | BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds. | |||
GenBank | EU956148 | 0.0 | EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_012698351.1 | 1e-162 | MADS-box transcription factor 47 isoform X2 | ||||
Swissprot | Q5K4R0 | 1e-118 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | K4AER7 | 1e-161 | K4AER7_SETIT; Uncharacterized protein | ||||
STRING | Si037358m | 1e-160 | (Setaria italica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 1e-77 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sevir.9G518400.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|