PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.9G478100.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family bZIP
Protein Properties Length: 382aa    MW: 40899.1 Da    PI: 9.6906
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.9G478100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.55.2e-17297350154
                         XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 
                         e+elk+++rkq+NRe+ArrsR+RK+ae ee +++++ L++eN++Lk+el++l++
  Sevir.9G478100.2.p 297 ERELKKQKRKQSNRESARRSRLRKQAEWEEVANRADLLKQENSSLKEELKQLQE 350
                         89*************************************************975 PP
2bZIP_121.16.8e-073423722555
                         HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1  25 kaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                         k+e+++L+ek+++L++eN++L ++l+el++e
  Sevir.9G478100.2.p 342 KEELKQLQEKCDSLTSENTSLHEKLKELEDE 372
                         799*************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.7E-281101IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.5E-19140265No hitNo description
Gene3DG3DSA:1.20.5.1703.4E-15292355No hitNo description
SMARTSM003388.6E-20297361IPR004827Basic-leucine zipper domain
PfamPF001701.9E-17297356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.541299362IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-9300356No hitNo description
CDDcd147021.91E-21302353No hitNo description
PROSITE patternPS000360304319IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MGKGDVATRS KSQKSSAIQN EQSTPTNPPT AYPDWSQFQA YYNTAGTAPV TPPAFFHSSV  60
APNPQGHPYM WGPQMMPPYG TPPPYAAMYA QGTPYQQAPM PPGSHPYSPY PMQSPNGTIQ  120
TPTSGAGGTE TDKSSKNKRK TPLKRSKGSL GSLDVVVAKN NKSPAKPSAS SSNEGSSQSE  180
SGSGSSSEGS STNSKSGSRT KDSSERGQGN DSRKGTQSSA VEPTQPSSGP VVLNPMMPFW  240
PVPPPMGGPA TTLNMGVDYW GAPASVPMHG KVVAAPTSAP SSNSRDIVLS DPAIQDEREL  300
KKQKRKQSNR ESARRSRLRK QAEWEEVANR ADLLKQENSS LKEELKQLQE KCDSLTSENT  360
SLHEKLKELE DEKSNGNWCK D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313319RRSRLRK
2313320RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.9G478100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0665280.0BT066528.1 Zea mays full-length cDNA clone ZM_BFb0014J02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004985057.10.0bZIP transcription factor 16
RefseqXP_022678888.10.0bZIP transcription factor 16
SwissprotQ501B24e-91BZP16_ARATH; bZIP transcription factor 16
TrEMBLK4AMZ00.0K4AMZ0_SETIT; Uncharacterized protein
STRINGSi040286m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.16e-60basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]